# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q33A 292 0.04092 d.113.1.1 95657 2ausB 60 0.08212 2apoB 60 0.3743 g.41.16.1 127135 1uliA 460 0.7550 b.33.1.2,d.129.3.3 107921,107922 2b1xA 470 1.031 b.33.1.2,d.129.3.3 127675,127676 1vm9A 111 1.081 b.33.1.1 108886 1rlyA 60 1.100 g.41.3.1 104988 2ct7A 86 1.121 g.44.1.4 130791 1fqtA 112 1.292 b.33.1.1 24441 2bmoA 447 2.839 b.33.1.2,d.129.3.3 128804,128805 2qjtA 352 3.451 1ss3A 50 3.574 g.2.3.1 105975 2aqaA 63 3.730 g.41.16.1 127168 2e72A 49 4.379 1lb3A 182 5.308 a.25.1.1 77873 2e4qA 109 5.557 1p91A 269 6.580 c.66.1.33 94378 2hesX 330 6.722 3c0dA 119 6.933 1xx6A 191 7.537 c.37.1.24,g.39.1.14 116139,116140 1jhdA 396 7.560 b.122.1.3,c.26.1.5 66712,66713 1s5aA 150 7.567 d.17.4.10 98525 1y8qB 640 8.299 2qkmB 266 9.415 1o7nA 449 9.490 b.33.1.2,d.129.3.3 81162,81163 2rfkB 53 12.69 1tg0A 68 12.87 1cskA 71 12.99 b.34.2.1 24513 2d9kA 75 13.62 1a8y 367 14.04 1ajjA 37 14.88 g.12.1.1 44609 2sli 679 15.01 2fiyA 309 15.87 e.59.1.1 133540 1c8uA 285 15.99 d.38.1.3,d.38.1.3 38547,38548 2de6A 392 16.41 b.33.1.2,d.129.3.3 131415,131416 1jd5A 124 17.60 g.52.1.1 66544 2v0cA 878 19.20 1vquA 374 19.40 2jz8A 87 21.11 2qtdA 105 21.54 2de6D 115 21.91 2i7fA 108 22.63 1cl4A 60 22.83 g.40.1.1 45171 2fa8A 105 23.22 c.47.1.23 133185 2hb0A 369 24.05 1l3yA 41 24.71 g.3.11.6 73558 1ptqA 50 25.31 g.49.1.1 45349 2b5lC 222 26.00 1n0zA 45 26.25 g.41.11.1 85247 2iafA 151 26.74 d.81.2.1 137157 1p22A 435 27.16 a.158.1.1,b.69.4.1 87715,87716 3c0cA 73 27.25 2ck3G 272 27.49 c.49.2.1 130562 3bk3C 67 28.35 1vk6A 269 28.37 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1qxfA 66 28.96 g.41.8.4 96527 2uvlA 96 28.97 1heiA 451 29.22 c.37.1.14,c.37.1.14 32463,32464 2jdiG 273 29.24 c.49.2.1 138272 1twfL 70 30.33 g.41.9.2 112737 1o8rA 94 30.65 d.234.1.1 86677 1ptq 50 31.21 2v9lA 274 32.36 1pq7A 224 32.49 b.47.1.2 95002 1w9pA 433 32.93 c.1.8.5,d.26.3.1 114412,114413 1g8kA 825 33.26 b.52.2.2,c.81.1.1 26920,35328 2j015 60 33.75 1kqfB 294 34.77 d.58.1.5,f.23.22.1 75900,75901 1dvpA 220 35.05 a.118.9.2,g.50.1.1 19216,45358 1oh0A 131 35.10 d.17.4.3 87004 2uvfA 608 36.11 2irpA 208 37.11 1beiA 35 42.13 g.19.1.1 44877 1dmmA 131 43.58 d.17.4.3 38114 2q3wA 111 44.49 b.33.1.1 139813 1dqcA 74 44.61 g.31.1.1 44964 1v9tA 166 45.33 b.62.1.1 108451 2bt6A 108 45.77 d.15.4.1 129152 2v1rA 80 45.83 1lopA 164 48.86 b.62.1.1 27510 2ot4A 525 49.60 2hf1A 68 49.78 1xwwA 157 50.37 2qt6A 498 51.67 1b9vA 390 52.07 b.68.1.1 27603 1v47A 349 52.64 b.122.1.3,c.26.1.5 100292,100293 1j8eA 44 53.72 g.12.1.1 66437 1jk7A 323 53.98 d.159.1.3 63144 2bwjA 199 54.46 2vqeR 88 55.40 1p9gA 41 56.10 g.3.1.1 104091 2exrA 524 56.50 6rxnA 45 57.18 g.41.5.1 45222 1w4rA 195 57.58 1rb9 53 57.71 2di0A 71 58.08 a.5.2.4 131521 1ayfA 105 58.66 d.15.4.1 37684 1mwvA 714 60.29 a.93.1.3,a.93.1.3 85161,85162 1l5pA 93 61.43 d.15.4.1 73598 1k2dB 189 61.52 b.1.1.2,d.19.1.1 84293,84294 3bbjA 272 62.65 1z02A 446 63.35 1zvfA 176 64.10 2gaiA 633 66.10 3c4zA 543 67.86 1yk4A 52 68.85 3cxkA 164 69.41 2conA 79 71.38 g.41.15.1 130680 1brfA 53 71.96 g.41.5.1 45236 3d9tA 97 73.45 2riqA 160 73.98 2pveA 54 74.07 1rb9A 52 75.25 g.41.5.1 45214 2z7bA 270 76.79 1topA 162 77.88 a.39.1.5 17223 2z3zA 706 78.27 1b13A 54 79.10 g.41.5.1 45227 1o13A 136 79.32 c.55.5.1 80762 3b48A 135 79.54 1qqgA 264 79.70 b.55.1.2,b.55.1.2 26987,26988 2pvxA 54 81.84 2bgxA 261 82.56 a.20.1.1,d.118.1.1 128504,128505 1xakA 83 82.61 b.1.24.1 115037 1v8hA 107 83.67 b.1.18.19 119870 2blfA 373 84.15 2bdvA 231 87.96 d.303.1.1 128345 1ulkA 126 88.82 g.3.1.1,g.3.1.1,g.3.1.1 99559,99560,99561