# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.05052 2apoB 60 0.2525 g.41.16.1 127135 1q33A 292 0.2952 d.113.1.1 95657 1o7nA 449 0.5846 b.33.1.2,d.129.3.3 81162,81163 1rlyA 60 0.6176 g.41.3.1 104988 1uliA 460 0.7256 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 0.8158 2ct7A 86 1.033 g.44.1.4 130791 2bmoA 447 1.124 b.33.1.2,d.129.3.3 128804,128805 2ckfA 454 1.295 1fqtA 112 1.608 b.33.1.1 24441 1z02A 446 1.613 1p91A 269 1.809 c.66.1.33 94378 3c0dA 119 2.337 1ltlA 279 2.700 b.40.4.11 84701 2e72A 49 2.846 2qtdA 105 3.537 2qkmB 266 3.739 2b1xA 470 3.810 b.33.1.2,d.129.3.3 127675,127676 1gnlA 544 4.002 e.26.1.1 70287 2de6A 392 5.202 b.33.1.2,d.129.3.3 131415,131416 2e4qA 109 5.569 1vm9A 111 6.961 b.33.1.1 108886 2fa8A 105 7.030 c.47.1.23 133185 2de6D 115 7.723 2fiyA 309 8.729 e.59.1.1 133540 2vpzA 765 8.751 1jhdA 396 9.154 b.122.1.3,c.26.1.5 66712,66713 2rfkB 53 9.421 2i7fA 108 10.47 2aqaA 63 11.92 g.41.16.1 127168 2jz8A 87 12.88 1y5iA 1246 13.55 b.52.2.2,c.81.1.1 122639,122640 1vk6A 269 13.69 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1eu1A 780 13.75 b.52.2.2,c.81.1.1 26903,35311 2b5lC 222 13.98 1ajjA 37 14.81 g.12.1.1 44609 1n0zA 45 14.93 g.41.11.1 85247 1jd5A 124 16.10 g.52.1.1 66544 1ma3A 253 16.16 c.31.1.5 78883 1ss3A 50 16.16 g.2.3.1 105975 1ptqA 50 16.42 g.49.1.1 45349 2jo6A 113 16.96 1h0hA 977 17.52 b.52.2.2,c.81.1.1 76435,76436 2q3wA 111 18.25 b.33.1.1 139813 2nx8A 179 19.45 2qjtA 352 19.73 2j015 60 20.13 1ptq 50 20.44 1lb3A 182 20.98 a.25.1.1 77873 1p6oA 161 21.35 c.97.1.2 94185 2vqeR 88 21.71 1l3yA 41 22.11 g.3.11.6 73558 1z6oA 212 22.21 a.25.1.1 124531 1twfL 70 23.69 g.41.9.2 112737 2d9kA 75 24.46 1z6oM 191 24.55 a.25.1.1 124543 2v3vA 723 24.65 2cihA 183 25.51 1cl4A 60 26.16 g.40.1.1 45171 1g38A 393 26.50 c.66.1.27,d.287.1.1 111567,111568 1j8eA 44 27.56 g.12.1.1 66437 1kqfA 1015 28.01 b.52.2.2,c.81.1.1 72871,72872 1wwrA 171 28.26 c.97.1.2 121366 1o8rA 94 29.85 d.234.1.1 86677 6rxnA 45 30.16 g.41.5.1 45222 1dvpA 220 31.01 a.118.9.2,g.50.1.1 19216,45358 1qxfA 66 31.11 g.41.8.4 96527 3cbjA 266 32.24 1a8y 367 32.39 1tg0A 68 33.15 2di0A 71 33.43 a.5.2.4 131521 2uubR 88 33.99 a.4.8.1 139949 1yk4A 52 34.89 1l5pA 93 35.20 d.15.4.1 73598 1o13A 136 35.43 c.55.5.1 80762 1brfA 53 36.27 g.41.5.1 45236 2napA 723 37.08 b.52.2.2,c.81.1.1 26926,35334 1y8qB 640 38.32 2riqA 160 38.84 2pveA 54 39.88 2b06A 155 40.35 d.113.1.1 127624 1b9vA 390 40.57 b.68.1.1 27603 3c4zA 543 41.02 2bt6A 108 41.14 d.15.4.1 129152 3bwwA 307 41.25 1x6mA 196 41.26 b.88.1.4 114920 1b13A 54 41.82 g.41.5.1 45227 2gaiA 633 42.00 1r03A 182 45.25 a.25.1.1 104675 1uwmA 106 45.36 d.15.4.1 119763 2pvxA 54 46.36 1rb9A 52 46.70 g.41.5.1 45214 1yuiA 54 46.97 g.37.1.1 45073 1ayfA 105 47.55 d.15.4.1 37684 2iv2X 715 47.69 b.52.2.2,c.81.1.1 137714,137715 2qjoA 341 48.26 3cngA 189 49.40 2b3jA 159 49.54 c.97.1.2 127787 3bk3C 67 50.69 1yfuA 174 50.98 b.82.1.20 123094 1mmcA 30 51.20 g.3.1.2 44061 2jrrA 67 51.30 1nscA 390 51.47 b.68.1.1 27591 1r7sA 106 51.88 d.15.4.1 97207 1xx6A 191 52.76 c.37.1.24,g.39.1.14 116139,116140 1e6eB 128 53.59 d.15.4.1 59300 1xlqA 106 54.25 d.15.4.1 122119 2oryA 346 54.37 1oqqA 106 54.74 d.15.4.1 93422 1lml 478 55.31 1n71A 180 56.02 d.108.1.1 85370 1xpaA 122 56.77 a.6.1.2,g.39.1.5 16308,45151 2yxxA 386 57.20 1a7iA 81 60.45 g.39.1.3,g.39.1.3 45143,45144 2ih2A 421 60.56 2qrdA 137 61.00 1wo3A 25 62.03 1yb0A 159 62.78 d.118.1.1 122865 1xakA 83 63.61 b.1.24.1 115037 2a8nA 144 64.12 c.97.1.2 126408 1iroA 54 64.87 g.41.5.1 45223 2conA 79 65.36 g.41.15.1 130680 2e7zA 727 65.44 1v54F 98 69.84 g.41.5.3 100327 1s7jA 262 71.04 d.21.1.2 98647 2fsaA 174 71.42 1wkqA 164 71.59 c.97.1.2 109393 2jroA 78 73.49 1z3aA 168 74.63 c.97.1.2 124396 2baiA 32 75.40 g.87.1.1 128237 1hk8A 605 75.75 c.7.1.3 83540 1rb9 53 76.46 1qf8A 182 76.49 g.41.4.1 45212 1xphA 150 78.64 d.169.1.1 122211 1t44G 147 78.87 d.109.1.1 106395 1omwA 689 80.58 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1gp0A 143 81.92 b.64.1.1 70300 2j01V 101 82.66 1dqcA 74 84.88 g.31.1.1 44964 1tgsI 56 84.94 g.68.1.1 44706 1lv3A 68 86.20 g.39.1.9 78231 2g84A 197 86.28 c.97.1.2 134766 1jocA 125 89.94 g.50.1.1,h.1.21.1 66990,66991