# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.07672 2apoB 60 0.3630 g.41.16.1 127135 1q33A 292 0.4562 d.113.1.1 95657 1rlyA 60 0.8804 g.41.3.1 104988 2ct7A 86 0.996 g.44.1.4 130791 1o7nA 449 1.588 b.33.1.2,d.129.3.3 81162,81163 1uliA 460 1.699 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 1.895 2qkmB 266 1.908 2bmoA 447 1.985 b.33.1.2,d.129.3.3 128804,128805 2ckfA 454 2.070 1z02A 446 2.491 1p91A 269 2.782 c.66.1.33 94378 3c0dA 119 4.042 1ltlA 279 4.047 b.40.4.11 84701 1fqtA 112 4.791 b.33.1.1 24441 2e72A 49 4.991 2b1xA 470 6.199 b.33.1.2,d.129.3.3 127675,127676 1jhdA 396 6.746 b.122.1.3,c.26.1.5 66712,66713 2aqaA 63 7.225 g.41.16.1 127168 2de6A 392 7.619 b.33.1.2,d.129.3.3 131415,131416 2jz8A 87 9.141 1jd5A 124 10.84 g.52.1.1 66544 1gnlA 544 10.93 e.26.1.1 70287 1vm9A 111 14.44 b.33.1.1 108886 2nx8A 179 14.64 2fa8A 105 14.76 c.47.1.23 133185 2rfkB 53 15.17 1n0zA 45 15.83 g.41.11.1 85247 1wwrA 171 16.22 c.97.1.2 121366 1ma3A 253 16.25 c.31.1.5 78883 2e4qA 109 16.55 1ptqA 50 17.25 g.49.1.1 45349 2fiyA 309 17.42 e.59.1.1 133540 1vk6A 269 17.46 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ss3A 50 18.65 g.2.3.1 105975 2vpzA 765 20.10 2qjtA 352 20.19 1o8rA 94 20.32 d.234.1.1 86677 2qtdA 105 20.71 1ptq 50 21.91 2vqeR 88 22.58 1p6oA 161 22.74 c.97.1.2 94185 2de6D 115 23.06 2jo6A 113 23.54 2b5lC 222 24.83 1eu1A 780 25.20 b.52.2.2,c.81.1.1 26903,35311 1ajjA 37 25.89 g.12.1.1 44609 1y5iA 1246 26.17 b.52.2.2,c.81.1.1 122639,122640 2di0A 71 27.26 a.5.2.4 131521 1h0hA 977 27.69 b.52.2.2,c.81.1.1 76435,76436 2j015 60 27.78 1xx6A 191 28.63 c.37.1.24,g.39.1.14 116139,116140 1dvpA 220 28.81 a.118.9.2,g.50.1.1 19216,45358 2q3wA 111 29.05 b.33.1.1 139813 2uubR 88 29.83 a.4.8.1 139949 1l3yA 41 30.70 g.3.11.6 73558 2g84A 197 31.58 c.97.1.2 134766 2d9kA 75 31.96 1tg0A 68 32.79 1twfL 70 32.87 g.41.9.2 112737 1l5pA 93 33.24 d.15.4.1 73598 2i7fA 108 33.38 2jrrA 67 34.71 1xakA 83 37.88 b.1.24.1 115037 6rxnA 45 39.28 g.41.5.1 45222 2p02A 396 41.51 2qjoA 341 41.59 1g38A 393 42.12 c.66.1.27,d.287.1.1 111567,111568 1kqfA 1015 42.17 b.52.2.2,c.81.1.1 72871,72872 2bt6A 108 43.17 d.15.4.1 129152 2v3vA 723 44.18 1z6oA 212 47.40 a.25.1.1 124531 1xpaA 122 48.00 a.6.1.2,g.39.1.5 16308,45151 1ayfA 105 49.08 d.15.4.1 37684 1a8y 367 50.37 1uwmA 106 50.97 d.15.4.1 119763 1hk8A 605 52.21 c.7.1.3 83540 1cl4A 60 52.50 g.40.1.1 45171 2b06A 155 56.54 d.113.1.1 127624 1r7sA 106 56.98 d.15.4.1 97207 2napA 723 57.94 b.52.2.2,c.81.1.1 26926,35334 2gaiA 633 58.11 2riqA 160 59.57 1lb3A 182 59.90 a.25.1.1 77873 1x6mA 196 60.66 b.88.1.4 114920 2pveA 54 61.39 1z6oM 191 61.40 a.25.1.1 124543 1yuiA 54 62.55 g.37.1.1 45073 1e6eB 128 63.50 d.15.4.1 59300 1yk4A 52 63.87 2b3jA 159 64.89 c.97.1.2 127787 1b13A 54 65.30 g.41.5.1 45227 2cihA 183 66.31 1brfA 53 67.24 g.41.5.1 45236 2ih2A 421 68.26 1lb6A 160 68.77 b.8.1.1 73798 3bwwA 307 68.93 1rb9A 52 69.00 g.41.5.1 45214 1lml 478 69.72 1xlqA 106 70.70 d.15.4.1 122119 1j8eA 44 70.84 g.12.1.1 66437 2gmgA 105 71.60 2hf1A 68 73.08 1oqqA 106 73.99 d.15.4.1 93422 1t44G 147 74.31 d.109.1.1 106395 1dqcA 74 76.30 g.31.1.1 44964 2ijzA 428 76.42 3cngA 189 77.27 1mmcA 30 78.16 g.3.1.2 44061 1o13A 136 78.93 c.55.5.1 80762 1wo3A 25 80.38 2a8nA 144 81.77 c.97.1.2 126408 1z3aA 168 82.71 c.97.1.2 124396 3bk3C 67 84.24 1r03A 182 84.49 a.25.1.1 104675 1jocA 125 86.28 g.50.1.1,h.1.21.1 66990,66991 1wkqA 164 86.30 c.97.1.2 109393 2pvxA 54 87.43