# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.06724 2apoB 60 0.2407 g.41.16.1 127135 1q33A 292 0.2837 d.113.1.1 95657 1o7nA 449 0.5521 b.33.1.2,d.129.3.3 81162,81163 1uliA 460 0.5743 b.33.1.2,d.129.3.3 107921,107922 2gbwA 454 0.7295 2bmoA 447 0.7745 b.33.1.2,d.129.3.3 128804,128805 1z02A 446 0.7993 1rlyA 60 0.8618 g.41.3.1 104988 2ct7A 86 0.9826 g.44.1.4 130791 2ckfA 454 1.145 2qkmB 266 1.312 1ltlA 279 1.922 b.40.4.11 84701 2de6A 392 2.320 b.33.1.2,d.129.3.3 131415,131416 2b1xA 470 2.517 b.33.1.2,d.129.3.3 127675,127676 1fqtA 112 3.310 b.33.1.1 24441 1p91A 269 3.487 c.66.1.33 94378 2e72A 49 4.169 1ptqA 50 5.331 g.49.1.1 45349 1ptq 50 6.738 2e4qA 109 7.545 2rfkB 53 7.649 1ma3A 253 8.070 c.31.1.5 78883 1g38A 393 8.608 c.66.1.27,d.287.1.1 111567,111568 2fiyA 309 9.169 e.59.1.1 133540 1vk6A 269 9.822 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1jhdA 396 10.42 b.122.1.3,c.26.1.5 66712,66713 2fa8A 105 10.81 c.47.1.23 133185 2jz8A 87 10.84 3c0dA 119 11.18 2qjtA 352 11.57 1jd5A 124 11.76 g.52.1.1 66544 1dvpA 220 11.80 a.118.9.2,g.50.1.1 19216,45358 2vqeR 88 11.91 1qxfA 66 11.94 g.41.8.4 96527 1n0zA 45 12.11 g.41.11.1 85247 2aqaA 63 12.43 g.41.16.1 127168 2nx8A 179 13.01 1gnlA 544 13.79 e.26.1.1 70287 1ss3A 50 14.69 g.2.3.1 105975 2uubR 88 14.80 a.4.8.1 139949 2qtdA 105 16.38 1xx6A 191 16.72 c.37.1.24,g.39.1.14 116139,116140 2ih2A 421 16.83 1wwrA 171 16.93 c.97.1.2 121366 2d9kA 75 18.18 1eu1A 780 18.38 b.52.2.2,c.81.1.1 26903,35311 2di0A 71 18.50 a.5.2.4 131521 2i7fA 108 19.44 1y5iA 1246 19.73 b.52.2.2,c.81.1.1 122639,122640 2vpzA 765 19.88 1o8rA 94 21.21 d.234.1.1 86677 6rxnA 45 21.31 g.41.5.1 45222 2b5lC 222 22.10 1h0hA 977 23.15 b.52.2.2,c.81.1.1 76435,76436 1ajjA 37 23.38 g.12.1.1 44609 1p6oA 161 23.63 c.97.1.2 94185 1twfL 70 24.59 g.41.9.2 112737 1x6mA 196 24.66 b.88.1.4 114920 2pveA 54 24.95 1l3yA 41 25.36 g.3.11.6 73558 1vm9A 111 25.52 b.33.1.1 108886 1uwmA 106 27.00 d.15.4.1 119763 1b13A 54 27.84 g.41.5.1 45227 1yk4A 52 27.86 1l5pA 93 29.14 d.15.4.1 73598 1cl4A 60 29.44 g.40.1.1 45171 1brfA 53 29.79 g.41.5.1 45236 1rb9A 52 30.29 g.41.5.1 45214 1xpaA 122 30.49 a.6.1.2,g.39.1.5 16308,45151 1xakA 83 31.01 b.1.24.1 115037 1lml 478 31.15 1z6oA 212 31.68 a.25.1.1 124531 2j015 60 31.69 2qjoA 341 32.25 1r7sA 106 32.99 d.15.4.1 97207 2v3vA 723 33.64 1b9vA 390 33.89 b.68.1.1 27603 2bt6A 108 33.94 d.15.4.1 129152 2riqA 160 34.74 2qkdA 404 35.34 1xlqA 106 35.55 d.15.4.1 122119 2napA 723 35.58 b.52.2.2,c.81.1.1 26926,35334 2gmgA 105 35.69 1ayfA 105 35.82 d.15.4.1 37684 1nscA 390 36.19 b.68.1.1 27591 1yuiA 54 36.45 g.37.1.1 45073 2de6D 115 36.66 1iroA 54 37.29 g.41.5.1 45223 1yfuA 174 37.78 b.82.1.20 123094 1lb3A 182 38.22 a.25.1.1 77873 2conA 79 38.72 g.41.15.1 130680 2g84A 197 38.94 c.97.1.2 134766 2b06A 155 39.02 d.113.1.1 127624 2pvxA 54 39.29 1z6oM 191 39.84 a.25.1.1 124543 3cngA 189 41.06 1hk8A 605 41.40 c.7.1.3 83540 1jocA 125 41.43 g.50.1.1,h.1.21.1 66990,66991 1vfyA 73 42.54 g.50.1.1 45357 2cihA 183 43.50 2hf1A 68 43.64 1tgsI 56 44.03 g.68.1.1 44706 1rb9 53 44.45 1t44G 147 44.52 d.109.1.1 106395 2gaiA 633 44.96 2p02A 396 46.35 3bwwA 307 47.43 1oqqA 106 47.48 d.15.4.1 93422 1a8y 367 49.19 2jo6A 113 49.93 1e6eB 128 50.00 d.15.4.1 59300 1kqfA 1015 50.79 b.52.2.2,c.81.1.1 72871,72872 2q3wA 111 51.10 b.33.1.1 139813 1s5aA 150 51.51 d.17.4.10 98525 1jm1A 204 52.92 b.33.1.1 71745 2i5oA 39 52.98 1r03A 182 53.46 a.25.1.1 104675 1tg0A 68 54.30 1v54F 98 58.59 g.41.5.3 100327 1yvoA 172 59.47 d.108.1.1 124106 1wkqA 164 61.31 c.97.1.2 109393 2jroA 78 62.91 2b3jA 159 65.56 c.97.1.2 127787 2oryA 346 65.80 1a7iA 81 66.64 g.39.1.3,g.39.1.3 45143,45144 2iv2X 715 67.38 b.52.2.2,c.81.1.1 137714,137715 1l8dA 112 69.20 h.4.12.1 73687 2r0lB 35 69.89 2jrrA 67 70.23 1lb6A 160 72.81 b.8.1.1 73798 2ibtA 421 73.40 c.66.1.27,d.287.1.1 137205,137206 1mmcA 30 73.58 g.3.1.2 44061 2a8nA 144 74.00 c.97.1.2 126408 1vqoZ 83 77.40 g.41.8.1 120387 2baiA 32 77.53 g.87.1.1 128237 1so7A 382 77.60 b.68.1.1 112106 1z3aA 168 81.98 c.97.1.2 124396 1jy2P 48 82.89 h.1.8.1 67442 1j8eA 44 82.95 g.12.1.1 66437 3bidA 64 84.56 1pq7A 224 85.52 b.47.1.2 95002 2bx9A 53 86.14 2e6fA 314 86.33 1lv3A 68 87.46 g.39.1.9 78231 1beiA 35 87.95 g.19.1.1 44877