# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.08639 1q33A 292 0.1897 d.113.1.1 95657 2apoB 60 0.3504 g.41.16.1 127135 1rlyA 60 0.9014 g.41.3.1 104988 1o7nA 449 0.9376 b.33.1.2,d.129.3.3 81162,81163 2gbwA 454 1.047 2bmoA 447 1.059 b.33.1.2,d.129.3.3 128804,128805 1uliA 460 1.196 b.33.1.2,d.129.3.3 107921,107922 2ckfA 454 1.299 2ct7A 86 1.358 g.44.1.4 130791 2qkmB 266 1.388 1z02A 446 1.976 1p91A 269 2.082 c.66.1.33 94378 1ltlA 279 2.169 b.40.4.11 84701 1fqtA 112 3.069 b.33.1.1 24441 2b1xA 470 3.807 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 4.213 b.33.1.2,d.129.3.3 131415,131416 2e72A 49 4.783 3c0dA 119 5.173 2qtdA 105 5.445 2jz8A 87 6.860 1jhdA 396 7.039 b.122.1.3,c.26.1.5 66712,66713 1gnlA 544 8.478 e.26.1.1 70287 2vqeR 88 8.879 2fa8A 105 9.554 c.47.1.23 133185 1ma3A 253 10.50 c.31.1.5 78883 1wwrA 171 11.12 c.97.1.2 121366 1jd5A 124 11.91 g.52.1.1 66544 1eu1A 780 11.95 b.52.2.2,c.81.1.1 26903,35311 2uubR 88 12.22 a.4.8.1 139949 2nx8A 179 13.06 2vpzA 765 13.15 1vm9A 111 15.16 b.33.1.1 108886 1vk6A 269 15.45 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2aqaA 63 16.36 g.41.16.1 127168 1ptqA 50 16.45 g.49.1.1 45349 2fiyA 309 16.80 e.59.1.1 133540 2de6D 115 17.58 2qjtA 352 18.29 1n0zA 45 19.46 g.41.11.1 85247 2rfkB 53 19.87 2e4qA 109 20.19 1y5iA 1246 21.47 b.52.2.2,c.81.1.1 122639,122640 1ptq 50 21.67 1h0hA 977 22.57 b.52.2.2,c.81.1.1 76435,76436 2i7fA 108 23.59 1o8rA 94 23.96 d.234.1.1 86677 1ss3A 50 24.13 g.2.3.1 105975 1l3yA 41 26.71 g.3.11.6 73558 1ajjA 37 27.08 g.12.1.1 44609 1xx6A 191 27.21 c.37.1.24,g.39.1.14 116139,116140 1g38A 393 27.25 c.66.1.27,d.287.1.1 111567,111568 2jo6A 113 27.57 1tg0A 68 27.81 2di0A 71 29.01 a.5.2.4 131521 1dvpA 220 29.50 a.118.9.2,g.50.1.1 19216,45358 2b5lC 222 29.59 2j015 60 30.65 1a8y 367 30.74 1b9vA 390 32.05 b.68.1.1 27603 1p6oA 161 32.78 c.97.1.2 94185 2d9kA 75 32.88 1o13A 136 33.98 c.55.5.1 80762 2b06A 155 33.99 d.113.1.1 127624 1xakA 83 34.76 b.1.24.1 115037 6rxnA 45 35.32 g.41.5.1 45222 1kqfA 1015 36.01 b.52.2.2,c.81.1.1 72871,72872 2gaiA 633 36.31 1l5pA 93 37.62 d.15.4.1 73598 1cl4A 60 38.05 g.40.1.1 45171 1twfL 70 39.24 g.41.9.2 112737 2bt6A 108 41.24 d.15.4.1 129152 2v3vA 723 41.51 2qjoA 341 42.31 1nscA 390 42.36 b.68.1.1 27591 1m2oA 768 43.05 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 3bk3C 67 43.08 2q3wA 111 43.18 b.33.1.1 139813 1r7sA 106 44.20 d.15.4.1 97207 1lml 478 44.54 1z6oA 212 46.16 a.25.1.1 124531 2ih2A 421 46.81 2napA 723 48.32 b.52.2.2,c.81.1.1 26926,35334 1ayfA 105 48.63 d.15.4.1 37684 1hk8A 605 49.17 c.7.1.3 83540 1z6oM 191 49.41 a.25.1.1 124543 1uwmA 106 49.61 d.15.4.1 119763 1yk4A 52 50.43 2pveA 54 51.13 1x6mA 196 51.77 b.88.1.4 114920 2cihA 183 51.86 1e6eB 128 52.53 d.15.4.1 59300 2yx6A 121 53.09 1s5aA 150 53.21 d.17.4.10 98525 1brfA 53 53.68 g.41.5.1 45236 1xpaA 122 53.70 a.6.1.2,g.39.1.5 16308,45151 2jrrA 67 55.07 1b13A 54 55.37 g.41.5.1 45227 1lb3A 182 57.41 a.25.1.1 77873 2p02A 396 57.49 1rb9A 52 57.69 g.41.5.1 45214 1qxfA 66 58.20 g.41.8.4 96527 1oqqA 106 60.23 d.15.4.1 93422 2riqA 160 60.28 1n71A 180 61.16 d.108.1.1 85370 2jroA 78 61.19 2fkiA 126 61.45 d.198.3.1 133657 1lb6A 160 61.86 b.8.1.1 73798 1yuiA 54 62.11 g.37.1.1 45073 2iv2X 715 62.41 b.52.2.2,c.81.1.1 137714,137715 3cngA 189 66.27 1rjiA 31 66.33 g.3.7.2 97568 1xlqA 106 66.76 d.15.4.1 122119 2pvxA 54 67.35 1iroA 54 68.59 g.41.5.1 45223 1t44G 147 68.63 d.109.1.1 106395 3c61A 314 69.78 1dqcA 74 71.11 g.31.1.1 44964 2b3jA 159 71.69 c.97.1.2 127787 2conA 79 71.92 g.41.15.1 130680 1yb0A 159 74.00 d.118.1.1 122865 2e6fA 314 74.81 1r03A 182 76.40 a.25.1.1 104675 2g45A 129 78.40 2oryA 346 78.75 2g84A 197 80.52 c.97.1.2 134766 1rb9 53 81.02 1mmcA 30 83.69 g.3.1.2 44061 2j01V 101 84.26 1wo3A 25 85.58 1y8qB 640 86.36 1yfuA 174 88.09 b.82.1.20 123094