# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ausB 60 0.3768 2apoB 60 1.579 g.41.16.1 127135 2fiyA 309 2.463 e.59.1.1 133540 1ma3A 253 2.668 c.31.1.5 78883 2qjtA 352 4.509 1jhdA 396 4.829 b.122.1.3,c.26.1.5 66712,66713 1yvoA 172 5.860 d.108.1.1 124106 2di0A 71 5.950 a.5.2.4 131521 1rlyA 60 6.534 g.41.3.1 104988 1tg0A 68 10.06 1twfL 70 10.99 g.41.9.2 112737 1y8qB 640 11.29 2e72A 49 12.22 1a8y 367 12.36 2qjoA 341 13.23 1vkcA 158 13.77 d.108.1.1 113663 1n0zA 45 14.63 g.41.11.1 85247 1ss3A 50 14.90 g.2.3.1 105975 2jrrA 67 15.41 1m2dA 110 16.22 c.47.1.11 78476 2ct7A 86 16.43 g.44.1.4 130791 1vk6A 269 17.68 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 1ltlA 279 22.96 b.40.4.11 84701 2jz8A 87 23.93 1o8rA 94 24.70 d.234.1.1 86677 1ajjA 37 27.03 g.12.1.1 44609 1o7nA 449 30.21 b.33.1.2,d.129.3.3 81162,81163 1q1aA 289 33.61 c.31.1.5 95561 1j8fA 323 34.37 c.31.1.5 62738 2gbwA 454 34.64 2j015 60 36.49 1p91A 269 37.00 c.66.1.33 94378 2qtdA 105 37.29 2aqaA 63 37.52 g.41.16.1 127168 2qkmB 266 39.33 2i79A 172 39.38 1pa2A 306 39.87 a.93.1.1 18693 1wyxA 69 40.63 1g8kA 825 41.21 b.52.2.2,c.81.1.1 26920,35328 1xx6A 191 41.34 c.37.1.24,g.39.1.14 116139,116140 1on0A 158 42.85 d.108.1.1 87095 1yc5A 246 44.83 c.31.1.5 122910 1yb0A 159 45.26 d.118.1.1 122865 1x6mA 196 45.36 b.88.1.4 114920 1nziA 159 45.98 b.23.1.1,g.3.11.1 86449,86450 1uliA 460 46.30 b.33.1.2,d.129.3.3 107921,107922 2bmoA 447 46.47 b.33.1.2,d.129.3.3 128804,128805 2eo0A 147 46.76 2pveA 54 49.93 1bgpA 309 51.02 a.93.1.1 18690 3c0fB 91 51.52 1ayfA 105 51.92 d.15.4.1 37684 1rb9A 52 54.24 g.41.5.1 45214 1wwuA 99 54.49 2ckfA 454 54.62 1ruwA 69 55.07 1ptqA 50 55.09 g.49.1.1 45349 1l3yA 41 55.10 g.3.11.6 73558 2bt6A 108 56.64 d.15.4.1 129152 1mfwA 107 59.27 d.15.11.1 84940 1qw2A 102 59.95 d.249.1.1 96456 1xakA 83 60.74 b.1.24.1 115037 2j01V 101 61.00 1dqcA 74 61.32 g.31.1.1 44964 3c5kA 109 64.37 2qkdA 404 65.48 1rb9 53 66.13 1b13A 54 68.10 g.41.5.1 45227 6rxnA 45 68.15 g.41.5.1 45222 2yrkA 55 68.51 1ptq 50 71.56 1zccA 248 72.23 c.1.18.3 124903 1lkoA 191 73.43 a.25.1.1,g.41.5.1 78063,78064 2dxqA 150 74.84 1g61A 228 75.61 d.126.1.1 41126 2g45A 129 76.24 2pvxA 54 76.57 3bxoA 239 77.00 1yk4A 52 78.20 1brfA 53 79.13 g.41.5.1 45236 1jd5A 124 80.51 g.52.1.1 66544 1l5pA 93 81.85 d.15.4.1 73598 1rzsA 61 85.25 a.35.1.2 105139 3bwwA 307 85.82 1mg4A 113 86.15 d.15.11.1 84953 2axwA 134 88.60 2o31A 67 88.71