# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ausB	60	1.555		
1q33A	292	5.593	d.113.1.1	95657
1yvoA	172	6.448	d.108.1.1	124106
2apoB	60	7.300	g.41.16.1	127135
1rlyA	60	8.365	g.41.3.1	104988
2fiyA	309	10.71	e.59.1.1	133540
1ma3A	253	12.10	c.31.1.5	78883
1jhdA	396	15.32	b.122.1.3,c.26.1.5	66712,66713
2di0A	71	17.25	a.5.2.4	131521
1ltlA	279	17.39	b.40.4.11	84701
1m2dA	110	18.32	c.47.1.11	78476
2qkmB	266	18.42		
1eu1A	780	24.39	b.52.2.2,c.81.1.1	26903,35311
1jd5A	124	27.88	g.52.1.1	66544
2glzA	153	30.87	d.81.3.1	135348
2pz0A	252	34.16		
2ct7A	86	37.35	g.44.1.4	130791
2vpzA	765	38.00		
1a8y	367	38.82		
1vkcA	158	42.68	d.108.1.1	113663
1n0zA	45	43.99	g.41.11.1	85247
1yb0A	159	48.06	d.118.1.1	122865
1y5iA	1246	49.60	b.52.2.2,c.81.1.1	122639,122640
1zccA	248	50.35	c.1.18.3	124903
2bt6A	108	51.27	d.15.4.1	129152
1s7jA	262	53.70	d.21.1.2	98647
1uwmA	106	56.81	d.15.4.1	119763
1g8kA	825	57.13	b.52.2.2,c.81.1.1	26920,35328
1l5pA	93	57.61	d.15.4.1	73598
1vk6A	269	58.06	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2qjtA	352	58.29		
1r7sA	106	59.81	d.15.4.1	97207
2qcfA	260	61.17		
1ayfA	105	65.61	d.15.4.1	37684
1o8rA	94	71.23	d.234.1.1	86677
1gnlA	544	72.05	e.26.1.1	70287
1tg0A	68	72.63		
1e6eB	128	73.22	d.15.4.1	59300
3ch0A	272	73.55		
2j015	60	77.32		
1oqqA	106	79.65	d.15.4.1	93422
1g38A	393	80.27	c.66.1.27,d.287.1.1	111567,111568
1h0hA	977	81.63	b.52.2.2,c.81.1.1	76435,76436
2j8mA	172	81.86		
3c0fB	91	83.30		
2e72A	49	84.20		
1x6mA	196	87.54	b.88.1.4	114920
2aqaA	63	89.40	g.41.16.1	127168