# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uctA 218 6.514 b.1.1.4,b.1.1.4 88467,88468 2ra2A 64 8.199 1z02A 446 9.328 2aj6A 159 11.75 d.108.1.1 126841 2f7fA 494 12.09 c.1.17.1,d.41.2.1 133088,133089 2pbiB 354 12.26 2bcjB 340 13.21 b.69.4.1 128289 1gotB 340 13.40 b.69.4.1 27648 1k32A 1045 13.97 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2bmoA 447 14.89 b.33.1.2,d.129.3.3 128804,128805 1w2xA 758 15.10 c.14.1.4,c.14.1.4 109134,109135 2ouiA 360 17.23 1erjA 393 17.80 b.69.4.1 27660 2yvpA 182 17.94 1h5rA 293 18.80 c.68.1.6 65623 2gnqA 336 19.26 1lvwA 295 19.45 c.68.1.6 84723 3bduA 62 19.79 1o7nA 449 22.51 b.33.1.2,d.129.3.3 81162,81163 1gxrA 337 22.73 b.69.4.1 70722 2ikqA 270 22.88 1a0rB 340 24.58 b.69.4.1 27658 2izrA 330 24.68 1pbyB 337 25.63 b.69.2.2 94422 2ausB 60 26.90 1a64A 97 27.80 b.1.1.1 19750 1nm1G 125 28.24 d.109.1.1 80653 1yge 839 29.01 2h3bA 494 30.11 2gx9A 129 31.56 d.299.1.1 135828 1pl8A 356 32.73 b.35.1.2,c.2.1.1 94878,94879 2fp8A 322 33.54 1zgkA 308 33.63 1gheA 177 33.94 d.108.1.1 76222 1y9aA 360 34.09 2h14A 317 34.74 2ho9A 167 36.43 3brkX 420 36.77 1clcA 639 37.14 a.102.1.2,b.1.18.2 18835,21872 1l0qA 391 37.57 b.1.3.1,b.69.2.3 77644,77645 2iwaA 266 39.05 2aq5A 402 39.10 1uyrA 737 39.54 c.14.1.4,c.14.1.4 100188,100189 1uliA 460 40.13 b.33.1.2,d.129.3.3 107921,107922 2okvA 209 41.45 1n71A 180 41.55 d.108.1.1 85370 2hqsA 415 41.72 b.68.4.1,c.51.2.1 136662,136663 1oo2A 119 42.19 b.3.4.1 93372 1rlyA 60 43.00 g.41.3.1 104988 2q8rE 66 43.72 1nexB 464 44.48 a.158.1.1,b.69.4.1 80443,80444 2b1xA 470 44.72 b.33.1.2,d.129.3.3 127675,127676 1j7gA 144 45.22 c.110.1.1 84130 3choA 610 47.32 1clc 639 47.52 2pbtA 134 49.24 1z4rA 168 50.36 d.108.1.1 124444 3b55A 451 51.14 1zxtA 76 51.43 1ygeA 839 51.51 a.119.1.1,b.12.1.1 19234,23634 2fh1A 344 51.99 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 1fxoA 293 52.53 c.68.1.6 34524 2ggoA 401 53.03 1hs6A 611 54.47 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1unnC 115 56.14 d.240.1.1 99680 1y7mA 164 59.67 b.160.1.1,d.7.1.1 122696,122697 1h2iA 209 61.11 d.50.1.3 76550 1r4pA 297 62.35 d.165.1.2 97025 2apoB 60 62.72 g.41.16.1 127135 2ovrB 445 62.74 1s3zA 165 63.91 d.108.1.1 105250 1mxgA 435 64.37 b.71.1.1,c.1.8.1 85193,85194 3cloA 258 66.53 1lkeA 184 72.01 b.60.1.1 84622 1jkeA 145 72.90 c.110.1.1 66791 3bneA 839 75.79 1nu5A 370 76.87 c.1.11.2,d.54.1.1 92183,92184 1t44G 147 77.90 d.109.1.1 106395 1zud1 251 79.00 1z2kA 109 79.22 2v72A 143 79.74 1iq9A 61 82.52 g.7.1.1 90669 2gbwA 454 83.27 1prtA 234 85.30 d.166.1.1 42253 1zsyA 357 87.85 2c5uA 375 88.16 2je3A 186 88.67 2yyhA 139 88.86