# List of top-scoring protein chains for T0480.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2zkr2	97	1.106		
1ffkW	73	5.311	g.41.8.1	45315
1pftA	50	6.406	g.41.3.1	45206
1jj2Y	73	12.81	g.41.8.1	63110
2e72A	49	17.49		
1pvmA	184	17.79	d.37.1.1,d.37.1.1,g.41.13.1	95171,95172,95173
1zinA	217	18.20	c.37.1.1,g.41.2.1	31915,45178
2qh1A	198	20.29		
2aqcA	63	24.45	g.41.16.1	127177
1n0zA	45	25.74	g.41.11.1	85247
3cngA	189	27.17		
2apoB	60	28.95	g.41.16.1	127135
2d3wA	248	33.36		
2k2pA	85	33.39		
2em5A	46	35.49		
1r9wA	145	40.12	d.89.1.2	97264
1vk6A	269	41.34	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1w6uA	302	46.75	c.2.1.2	114288
1xyr2	237	48.42		
1blaA	155	49.64	b.42.1.1	25502
3cc2Z	116	52.52		
3bczA	293	53.16		
2qa4Z	92	54.93		
1s72Z	73	55.08	g.41.8.1	105345
1vqoZ	83	56.33	g.41.8.1	120387
1dgi2	268	57.38		
1hxs2	272	63.32		
1ar72	272	63.80		
1zxtA	76	64.12		
1ul5A	88	64.57	g.72.1.1	99539
1jnsA	92	66.92	d.26.1.1	84185
2hf3A	374	67.87	c.55.1.1,c.55.1.1	136373,136374
2di0A	71	69.66	a.5.2.4	131521
1meyC	87	75.05	k.12.1.1	46430
1iilA	155	75.81	b.42.1.1	62433
1jr8A	117	79.59	a.24.15.1	67115
2osbA	216	79.84		
1p3jA	217	82.30	c.37.1.1,g.41.2.1	94022,94023
2p3sA	217	82.72		
2eu8A	216	82.92		
1basA	154	83.12	b.42.1.1	25488
2oo7A	217	83.35		
2qajA	217	83.35		
2oriA	216	83.55		
2j01Y	110	84.90		
1z54A	132	85.14	d.38.1.1	124450
1pov0	340	87.69		
1hk8A	605	87.75	c.7.1.3	83540