# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.1019 g.44.1.4 130791 2apoB 60 0.2221 g.41.16.1 127135 1vk6A 269 0.2373 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ausB 60 0.3769 1q33A 292 0.8054 d.113.1.1 95657 2e72A 49 1.330 2ckfA 454 1.755 2bmoA 447 1.835 b.33.1.2,d.129.3.3 128804,128805 2gbwA 454 2.091 1dl6A 58 2.267 g.41.3.1 45207 2de6A 392 2.308 b.33.1.2,d.129.3.3 131415,131416 1rlyA 60 2.420 g.41.3.1 104988 2b1xA 470 2.568 b.33.1.2,d.129.3.3 127675,127676 1z02A 446 3.053 2qtdA 105 7.097 1ltlA 279 7.872 b.40.4.11 84701 2jo6A 113 8.084 2i7fA 108 8.549 1uliA 460 8.858 b.33.1.2,d.129.3.3 107921,107922 1nscA 390 8.891 b.68.1.1 27591 1eg9A 449 9.117 b.33.1.2,d.129.3.3 24443,41322 1o7nA 449 9.185 b.33.1.2,d.129.3.3 81162,81163 3bm4A 210 9.244 1ptqA 50 9.96 g.49.1.1 45349 1n0zA 45 10.75 g.41.11.1 85247 2vqeR 88 11.07 2e4qA 109 11.33 1jd5A 124 12.20 g.52.1.1 66544 1a7iA 81 12.88 g.39.1.3,g.39.1.3 45143,45144 2uubR 88 13.20 a.4.8.1 139949 1sjgA 112 13.33 b.33.1.1 105647 2q3wA 111 13.59 b.33.1.1 139813 1eu1A 780 13.68 b.52.2.2,c.81.1.1 26903,35311 1ptq 50 13.74 1jj2Y 73 14.91 g.41.8.1 63110 1g8kA 825 15.30 b.52.2.2,c.81.1.1 26920,35328 1vm9A 111 15.53 b.33.1.1 108886 2de6D 115 15.64 1fqtA 112 16.82 b.33.1.1 24441 1f37A 110 17.89 c.47.1.11 33088 2qkmB 266 17.89 2rfkB 53 18.70 1fn8A 224 19.15 b.47.1.2 26012 1twfL 70 19.42 g.41.9.2 112737 1pq7A 224 19.68 b.47.1.2 95002 2ivfA 976 19.78 1rfs 139 20.28 1try 224 20.48 1ss3A 50 20.49 g.2.3.1 105975 1tiyA 164 20.67 c.97.1.2 107012 1gz2A 142 22.92 d.169.1.1 83392 1x6mA 196 23.38 b.88.1.4 114920 1cl4A 60 23.81 g.40.1.1 45171 3bk3C 67 23.90 1v8yA 170 24.19 d.113.1.1 113581 2j015 60 26.05 1ma3A 253 26.17 c.31.1.5 78883 6rxnA 45 27.87 g.41.5.1 45222 2di0A 71 28.49 a.5.2.4 131521 2v3vA 723 30.49 1ro5A 201 31.17 d.108.1.3 105023 1j8eA 44 31.54 g.12.1.1 66437 1dat 174 31.55 2bt6A 108 32.08 d.15.4.1 129152 3c7bA 417 32.35 2b5hA 200 32.69 b.82.1.19 127894 1lv3A 68 32.77 g.39.1.9 78231 1l3yA 41 32.95 g.3.11.6 73558 2vpzA 765 33.12 2vrwB 406 34.13 2i7rA 118 34.45 d.32.1.2 137102 1r7sA 106 34.67 d.15.4.1 97207 1s72Z 73 35.03 g.41.8.1 105345 1v54F 98 36.12 g.41.5.3 100327 2bv2A 83 36.25 2napA 723 36.73 b.52.2.2,c.81.1.1 26926,35334 3cngA 189 38.09 3c0dA 119 39.14 2fa8A 105 39.19 c.47.1.23 133185 2za8A 167 40.53 2occF 98 41.70 g.41.5.3 45256 1yk4A 52 41.83 2orwA 184 43.60 2yvpA 182 43.68 1v47A 349 45.17 b.122.1.3,c.26.1.5 100292,100293 1sbzA 197 46.61 c.34.1.1 112068 2e7zA 727 46.98 1qxfA 66 47.54 g.41.8.4 96527 1h0hA 977 48.30 b.52.2.2,c.81.1.1 76435,76436 2d13A 227 48.85 c.26.2.1 131121 2j01V 101 49.08 2pveA 54 49.59 1l2tA 235 49.85 c.37.1.12 73514 2jroA 78 50.96 2i5oA 39 51.11 2hf1A 68 51.54 1xakA 83 52.71 b.1.24.1 115037 1e6eB 128 53.28 d.15.4.1 59300 2ejbA 189 53.99 1rb9A 52 54.25 g.41.5.1 45214 1iroA 54 54.52 g.41.5.1 45223 1s5aA 150 56.24 d.17.4.10 98525 1b13A 54 57.44 g.41.5.1 45227 2iv2X 715 58.16 b.52.2.2,c.81.1.1 137714,137715 1e3jA 352 61.30 b.35.1.2,c.2.1.1 24765,29781 2d8qA 70 61.54 g.85.1.1 131335 2vm5A 106 61.68 2a4nA 182 61.70 d.108.1.1 126159 1pl8A 356 61.72 b.35.1.2,c.2.1.1 94878,94879 2i2lA 142 61.79 2jz8A 87 61.91 2pvxA 54 62.10 2fkiA 126 63.65 d.198.3.1 133657 2riqA 160 65.67 1m2kA 249 66.04 c.31.1.5 84754 1wkqA 164 66.52 c.97.1.2 109393 1ayoA 130 66.80 b.2.4.1 22431 2uvlA 96 67.03 2pmzP 48 69.14 2fha 183 70.44 2oap1 511 70.81 1lt3A 240 70.83 d.166.1.1 42230 3bwwA 307 72.99 2ibtA 421 73.32 c.66.1.27,d.287.1.1 137205,137206 3c7bB 366 73.85 2b5lC 222 74.85 1wo3A 25 75.47 2poiA 94 76.67 1hdlA 55 77.14 g.68.1.2 65808 1yqdA 366 77.33 1mzbA 136 78.78 a.4.5.42 91497 1jocA 125 78.86 g.50.1.1,h.1.21.1 66990,66991 1rb9 53 79.10 2fmlA 273 80.03 a.4.5.68,d.113.1.6 133778,133779 1mmcA 30 81.18 g.3.1.2 44061 2nq2C 253 82.08 1kzfA 230 82.25 d.108.1.3 73354 1dmmA 131 82.32 d.17.4.3 38114 1brfA 53 83.96 g.41.5.1 45236 1lluA 342 85.91 b.35.1.2,c.2.1.1 91064,91065 1r4yA 136 88.53 d.1.1.3 97056