# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.1093 g.44.1.4 130791 1vk6A 269 0.2028 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.2543 g.41.16.1 127135 2ausB 60 0.3210 2bmoA 447 1.188 b.33.1.2,d.129.3.3 128804,128805 1z02A 446 1.398 1q33A 292 1.431 d.113.1.1 95657 2de6A 392 1.527 b.33.1.2,d.129.3.3 131415,131416 2ckfA 454 1.775 2e72A 49 1.950 2b1xA 470 1.981 b.33.1.2,d.129.3.3 127675,127676 2gbwA 454 2.156 1rlyA 60 2.196 g.41.3.1 104988 1dl6A 58 2.846 g.41.3.1 45207 2q3wA 111 5.550 b.33.1.1 139813 1o7nA 449 7.221 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 7.394 b.33.1.2,d.129.3.3 24443,41322 1jj2Y 73 7.757 g.41.8.1 63110 3bm4A 210 8.524 1jd5A 124 9.215 g.52.1.1 66544 2i7fA 108 9.777 1uliA 460 10.01 b.33.1.2,d.129.3.3 107921,107922 1ptqA 50 10.07 g.49.1.1 45349 2e4qA 109 10.86 1n0zA 45 11.24 g.41.11.1 85247 2de6D 115 11.29 1ltlA 279 11.54 b.40.4.11 84701 1vm9A 111 12.22 b.33.1.1 108886 1pq7A 224 13.83 b.47.1.2 95002 1ptq 50 13.95 1fqtA 112 14.01 b.33.1.1 24441 2qtdA 105 14.17 2ivfA 976 14.20 1v8yA 170 14.98 d.113.1.1 113581 1fn8A 224 15.00 b.47.1.2 26012 1x6mA 196 15.38 b.88.1.4 114920 2hf1A 68 15.84 1try 224 16.14 2rfkB 53 16.31 1rfs 139 17.18 1twfL 70 17.54 g.41.9.2 112737 1a7iA 81 18.15 g.39.1.3,g.39.1.3 45143,45144 1sjgA 112 18.16 b.33.1.1 105647 2jo6A 113 18.35 1tiyA 164 19.01 c.97.1.2 107012 1s72Z 73 19.58 g.41.8.1 105345 1g8kA 825 20.23 b.52.2.2,c.81.1.1 26920,35328 1eu1A 780 20.34 b.52.2.2,c.81.1.1 26903,35311 1nscA 390 21.20 b.68.1.1 27591 3bk3C 67 21.30 2v3vA 723 21.34 2j015 60 22.01 2vpzA 765 22.03 6rxnA 45 23.41 g.41.5.1 45222 2uubR 88 24.44 a.4.8.1 139949 3cngA 189 25.16 2vqeR 88 26.04 2i7rA 118 27.30 d.32.1.2 137102 1v54F 98 27.64 g.41.5.3 100327 1ma3A 253 27.77 c.31.1.5 78883 1lv3A 68 27.88 g.39.1.9 78231 1j8eA 44 28.43 g.12.1.1 66437 1h0hA 977 28.56 b.52.2.2,c.81.1.1 76435,76436 1ro5A 201 28.74 d.108.1.3 105023 3c7bA 417 29.20 2b5hA 200 29.87 b.82.1.19 127894 1yk4A 52 30.68 2occF 98 31.47 g.41.5.3 45256 1cl4A 60 32.13 g.40.1.1 45171 2qkmB 266 32.25 3c0dA 119 32.89 2pveA 54 33.03 1ayoA 130 33.98 b.2.4.1 22431 1rb9A 52 34.21 g.41.5.1 45214 1xakA 83 34.87 b.1.24.1 115037 2napA 723 34.98 b.52.2.2,c.81.1.1 26926,35334 1iroA 54 35.62 g.41.5.1 45223 1b13A 54 38.59 g.41.5.1 45227 1f37A 110 38.92 c.47.1.11 33088 2yvpA 182 39.35 2iv2X 715 40.54 b.52.2.2,c.81.1.1 137714,137715 1ss3A 50 40.98 g.2.3.1 105975 2pvxA 54 41.29 2riqA 160 41.62 2vrwB 406 42.37 2e7zA 727 43.67 2d13A 227 44.97 c.26.2.1 131121 2uvlA 96 47.41 1wkqA 164 47.94 c.97.1.2 109393 1s5aA 150 48.16 d.17.4.10 98525 1qxfA 66 50.19 g.41.8.4 96527 1yqdA 366 51.38 2bt6A 108 51.83 d.15.4.1 129152 1dat 174 54.24 2nx8A 179 54.77 1brfA 53 56.62 g.41.5.1 45236 1rb9 53 56.70 1pl8A 356 57.24 b.35.1.2,c.2.1.1 94878,94879 2orwA 184 58.58 2d8qA 70 58.70 g.85.1.1 131335 1p6oA 161 58.77 c.97.1.2 94185 2fa8A 105 58.78 c.47.1.23 133185 2b06A 155 59.13 d.113.1.1 127624 1l3yA 41 59.24 g.3.11.6 73558 2di0A 71 60.24 a.5.2.4 131521 2a4nA 182 60.89 d.108.1.1 126159 2vm5A 106 61.80 1e3jA 352 62.66 b.35.1.2,c.2.1.1 24765,29781 1gz2A 142 62.68 d.169.1.1 83392 1r7sA 106 62.99 d.15.4.1 97207 2qjtA 352 65.22 2oap1 511 65.59 2qtzA 539 65.85 2za8A 167 66.35 1mmcA 30 67.83 g.3.1.2 44061 2fmlA 273 68.84 a.4.5.68,d.113.1.6 133778,133779 2i5oA 39 68.95 2ejbA 189 69.55 1xpaA 122 70.20 a.6.1.2,g.39.1.5 16308,45151 3bidA 64 71.41 2gnrA 145 75.22 1dmmA 131 75.45 d.17.4.3 38114 1sbzA 197 75.68 c.34.1.1 112068 2gqrA 237 76.63 1v47A 349 78.11 b.122.1.3,c.26.1.5 100292,100293 1kzfA 230 78.61 d.108.1.3 73354 1vqoZ 83 79.07 g.41.8.1 120387 2a8nA 144 80.31 c.97.1.2 126408 1gp0A 143 81.93 b.64.1.1 70300 2jz8A 87 83.35 2g45A 129 86.45 1jqbA 351 86.89 b.35.1.2,c.2.1.1 77151,77152 3c7bB 366 87.05 2bv2A 83 87.76 1lt3A 240 88.67 d.166.1.1 42230