# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.1059 g.44.1.4 130791 1q33A 292 0.2777 d.113.1.1 95657 1vk6A 269 0.2856 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.3477 g.41.16.1 127135 2ausB 60 0.5031 1z02A 446 0.9123 2bmoA 447 1.029 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.068 b.33.1.2,d.129.3.3 131415,131416 2e72A 49 1.086 2b1xA 470 1.175 b.33.1.2,d.129.3.3 127675,127676 2ckfA 454 1.204 2gbwA 454 1.281 2qtdA 105 2.169 1v8yA 170 2.589 d.113.1.1 113581 1dl6A 58 2.619 g.41.3.1 45207 2i7fA 108 2.817 1rlyA 60 2.911 g.41.3.1 104988 1ltlA 279 3.487 b.40.4.11 84701 2e4qA 109 3.952 1ptqA 50 4.150 g.49.1.1 45349 1fn8A 224 4.312 b.47.1.2 26012 1pq7A 224 4.513 b.47.1.2 95002 1ptq 50 5.278 1fqtA 112 5.364 b.33.1.1 24441 1uliA 460 5.525 b.33.1.2,d.129.3.3 107921,107922 1o7nA 449 5.655 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 5.800 b.33.1.2,d.129.3.3 24443,41322 1try 224 5.802 2yvpA 182 7.184 1ayoA 130 7.219 b.2.4.1 22431 1eu1A 780 7.407 b.52.2.2,c.81.1.1 26903,35311 1jj2Y 73 7.546 g.41.8.1 63110 1qxfA 66 8.725 g.41.8.4 96527 1nscA 390 8.820 b.68.1.1 27591 1x6mA 196 9.470 b.88.1.4 114920 1tiyA 164 9.584 c.97.1.2 107012 1a7iA 81 9.827 g.39.1.3,g.39.1.3 45143,45144 1n0zA 45 11.45 g.41.11.1 85247 1rfs 139 11.79 1ma3A 253 12.14 c.31.1.5 78883 1twfL 70 12.40 g.41.9.2 112737 1jd5A 124 12.58 g.52.1.1 66544 2vqeR 88 12.61 1ss3A 50 13.44 g.2.3.1 105975 2uubR 88 13.81 a.4.8.1 139949 2q3wA 111 13.88 b.33.1.1 139813 2vrwB 406 13.90 1xakA 83 14.01 b.1.24.1 115037 2jo6A 113 14.32 3cngA 189 14.77 1s72Z 73 14.80 g.41.8.1 105345 2qkmB 266 14.98 2b5hA 200 15.01 b.82.1.19 127894 1s5aA 150 15.03 d.17.4.10 98525 1wkqA 164 15.84 c.97.1.2 109393 1f37A 110 17.04 c.47.1.11 33088 1lv3A 68 17.21 g.39.1.9 78231 2de6D 115 17.38 3bm4A 210 17.65 1v54F 98 17.69 g.41.5.3 100327 1j8eA 44 17.91 g.12.1.1 66437 2fkiA 126 18.06 d.198.3.1 133657 1ro5A 201 18.50 d.108.1.3 105023 2bngA 149 19.15 1tuhA 156 20.01 d.17.4.11 107345 2hf1A 68 20.11 6rxnA 45 20.61 g.41.5.1 45222 1vm9A 111 21.09 b.33.1.1 108886 2j015 60 21.77 2b06A 155 22.06 d.113.1.1 127624 1cl4A 60 22.14 g.40.1.1 45171 2vpzA 765 22.29 1r7sA 106 22.74 d.15.4.1 97207 1vhrA 184 22.83 c.45.1.1 32651 1o8rA 94 23.63 d.234.1.1 86677 1rb9A 52 24.44 g.41.5.1 45214 1gz2A 142 24.48 d.169.1.1 83392 2nx8A 179 24.75 3c0dA 119 25.48 2d8qA 70 25.59 g.85.1.1 131335 2i7rA 118 25.66 d.32.1.2 137102 2e7zA 727 25.71 2v3vA 723 25.77 1g8kA 825 26.15 b.52.2.2,c.81.1.1 26920,35328 2occF 98 26.21 g.41.5.3 45256 2pveA 54 26.31 2riqA 160 26.40 2bs6A 90 26.63 2jroA 78 26.83 2za8A 167 27.64 1sjgA 112 27.67 b.33.1.1 105647 2fmlA 273 27.72 a.4.5.68,d.113.1.6 133778,133779 2a4nA 182 27.94 d.108.1.1 126159 2iv2X 715 27.99 b.52.2.2,c.81.1.1 137714,137715 1iroA 54 28.16 g.41.5.1 45223 2qjtA 352 28.84 1dat 174 28.97 1yk4A 52 29.12 1sjwA 144 29.14 d.17.4.9 98899 2gqrA 237 29.39 2orwA 184 29.84 1b13A 54 30.37 g.41.5.1 45227 3c7bA 417 30.42 1h0hA 977 30.80 b.52.2.2,c.81.1.1 76435,76436 2ibtA 421 31.56 c.66.1.27,d.287.1.1 137205,137206 2a8nA 144 31.67 c.97.1.2 126408 2pvxA 54 32.00 2cy9A 140 32.18 d.38.1.5 131019 2napA 723 32.48 b.52.2.2,c.81.1.1 26926,35334 1gp0A 143 32.64 b.64.1.1 70300 2geyA 158 32.81 2aenA 164 32.84 1hj8A 222 32.93 b.47.1.2 65844 3bk3C 67 33.84 1rb9 53 34.15 3bidA 64 34.29 2conA 79 34.69 g.41.15.1 130680 1kqfA 1015 35.09 b.52.2.2,c.81.1.1 72871,72872 1l1dA 152 36.03 b.88.1.3 73452 1si6X 282 36.43 d.151.1.2 118968 2jz8A 87 36.88 1sqrA 95 37.75 b.43.3.3 112108 2i5oA 39 37.79 1wwrA 171 37.81 c.97.1.2 121366 1jocA 125 38.11 g.50.1.1,h.1.21.1 66990,66991 1h4wA 224 38.12 b.47.1.2 65622 1nwwA 149 38.88 d.17.4.8 86306 1ku0A 388 38.92 c.69.1.18 72994 2bt6A 108 39.00 d.15.4.1 129152 2di0A 71 39.08 a.5.2.4 131521 2ejbA 189 39.24 2d13A 227 39.91 c.26.2.1 131121 2fa8A 105 40.12 c.47.1.23 133185 2i2lA 142 40.22 1f7zA 233 40.67 b.47.1.2 59681 2rfkB 53 41.09 1brfA 53 42.14 g.41.5.1 45236 2cs7A 55 42.73 d.9.2.1 130748 1v47A 349 43.13 b.122.1.3,c.26.1.5 100292,100293 1dmmA 131 44.22 d.17.4.3 38114 2vl6A 268 44.78 1o13A 136 44.93 c.55.5.1 80762 2ivfA 976 45.04 2oap1 511 46.30 1m2dA 110 46.56 c.47.1.11 78476 1l3yA 41 47.69 g.3.11.6 73558 3silA 379 47.93 b.68.1.1 27542 1lvoA 302 48.25 b.47.1.4 74284 1pl8A 356 48.44 b.35.1.2,c.2.1.1 94878,94879 2g0bA 198 48.98 1rtuA 114 49.30 d.1.1.4 36139 1e3jA 352 49.35 b.35.1.2,c.2.1.1 24765,29781 1g8kB 133 49.58 b.33.1.1 24435 1e3dB 542 49.69 e.18.1.1 59189 1vhzA 198 49.82 d.113.1.1 100718 1hdlA 55 49.98 g.68.1.2 65808 1sbzA 197 50.03 c.34.1.1 112068 1kzfA 230 50.40 d.108.1.3 73354 2e1xA 27 51.09 2fha 183 51.29 1v5nA 89 53.60 g.49.1.3 108380 1lt3A 240 53.65 d.166.1.1 42230 1m2kA 249 53.94 c.31.1.5 84754 2djlA 314 56.30 1wyxA 69 58.06 1mqeA 207 58.31 d.113.1.1 91394 2jmoA 80 58.45 1mzbA 136 59.10 a.4.5.42 91497 1xpaA 122 59.33 a.6.1.2,g.39.1.5 16308,45151 2drmA 58 59.66 2a15A 139 60.42 d.17.4.3 125973 1u3aA 189 61.36 c.47.1.13 119504 1opy 131 61.41 1uj0A 62 61.92 b.34.2.1 99449 2b5lC 222 62.48 1ywpA 64 62.90 1vzwA 244 63.38 c.1.2.1 120553 3bwwA 307 63.41 2r0lB 35 63.65 1y7mA 164 64.07 b.160.1.1,d.7.1.1 122696,122697 2ialB 240 64.62 2d9kA 75 65.07 1zy7A 403 65.08 1x0tA 120 65.52 2f0xA 148 67.26 d.38.1.5 132673 1m4yA 171 67.79 d.153.1.4 84802 1a73A 163 68.09 d.4.1.3 37145 2uvlA 96 68.16 1y0mA 61 68.31 1v73A 342 68.55 1bq9A 54 69.38 g.41.5.1 45238 2yqpA 60 70.48 2bbkL 125 70.71 g.21.1.1 44882 2dsmA 72 71.02 2eppA 66 71.17 1wjnA 97 71.34 d.15.1.1 114703 1zatA 250 71.39 b.160.1.1,d.335.1.1 124845,124846 1yqdA 366 71.71 1eo1A 124 71.82 c.55.5.1 33739 2fjrA 189 72.41 1ckaA 57 72.85 b.34.2.1 24459 3cxkA 164 72.85 1yn8A 59 72.99 2qghA 425 73.05 1b71A 191 73.18 a.25.1.1,g.41.5.1 16647,45246 1sdwA 314 74.52 b.121.1.2,b.121.1.2 98810,98811 1oebA 62 74.53 b.34.2.1 86909 2ov9A 216 74.65 1pcfA 66 75.46 d.18.1.1 38142 1dvpA 220 75.57 a.118.9.2,g.50.1.1 19216,45358 1b9vA 390 75.62 b.68.1.1 27603 1yi9A 309 76.16 b.121.1.2,b.121.1.2 123276,123277 1wuiL 534 76.29 e.18.1.1 121289 1lcyA 325 76.43 b.36.1.4,b.47.1.1 73834,73835 1vqoZ 83 76.78 g.41.8.1 120387 1kte 105 77.16 1e6eB 128 77.37 d.15.4.1 59300 1xlqA 106 77.61 d.15.4.1 122119 2i6cA 160 77.66 d.108.1.1 137095 2jcqA 154 78.14 2dsxA 52 79.00 g.41.5.1 131699 2ih2A 421 79.73 2pspA 106 79.74 g.16.1.1,g.16.1.1 44730,44731 1ixlA 131 79.95 d.38.1.5 90717 1ubkL 534 80.02 e.18.1.1 88422 1gh9A 71 80.63 g.41.6.1 45266 3c7bB 366 81.26 1w70A 60 81.41 1xmtA 103 81.88 d.108.1.1 115561 1q3yA 42 82.47 g.40.1.1 104530 1xbtA 193 83.09 c.37.1.24,g.39.1.14 115080,115081 1utcA 363 83.13 a.118.1.4,b.69.6.1 99914,99915 2jrpA 81 83.64 1mmcA 30 84.18 g.3.1.2 44061 1lb3A 182 84.28 a.25.1.1 77873 1z6oM 191 84.47 a.25.1.1 124543 1ruwA 69 85.01 1utiA 58 85.03 b.34.2.1 99962 1d4xG 126 85.20 d.109.1.1 59109 1lluA 342 85.24 b.35.1.2,c.2.1.1 91064,91065 2g45A 129 85.27 1vj0A 380 85.49 b.35.1.2,c.2.1.1 100786,100787 1b87A 181 85.49 d.108.1.1 40797 1xebA 150 85.72 d.108.1.1 115219 1xx6A 191 86.24 c.37.1.24,g.39.1.14 116139,116140 1msoB 30 86.35 g.1.1.1 85092 2e6fA 314 86.74 1r4yA 136 86.77 d.1.1.3 97056 1vprA 374 86.90 b.60.1.7 120066 1zuyA 58 87.07 1tl2A 236 87.28 b.67.1.1 27541 2bh0A 208 87.73 1ltsA 185 88.28 d.166.1.1 42229 1y9aA 360 88.92 2iblA 130 89.27 1dsqA 21 89.74 g.40.1.1 45173 1utyA 187 89.75 b.147.1.1 108036