# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.06558 g.44.1.4 130791 1vk6A 269 0.1087 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.1836 g.41.16.1 127135 2ausB 60 0.2005 1q33A 292 0.4396 d.113.1.1 95657 2bmoA 447 0.8808 b.33.1.2,d.129.3.3 128804,128805 2de6A 392 1.022 b.33.1.2,d.129.3.3 131415,131416 2e72A 49 1.033 2b1xA 470 1.104 b.33.1.2,d.129.3.3 127675,127676 1z02A 446 1.106 1rlyA 60 1.126 g.41.3.1 104988 2ckfA 454 1.145 2gbwA 454 1.186 1dl6A 58 1.312 g.41.3.1 45207 2qtdA 105 2.218 1jj2Y 73 3.676 g.41.8.1 63110 2rfkB 53 3.785 2e4qA 109 3.945 2i7fA 108 3.971 2de6D 115 4.589 1ptqA 50 4.913 g.49.1.1 45349 1eu1A 780 4.971 b.52.2.2,c.81.1.1 26903,35311 1uliA 460 5.071 b.33.1.2,d.129.3.3 107921,107922 1o7nA 449 5.179 b.33.1.2,d.129.3.3 81162,81163 1fqtA 112 5.310 b.33.1.1 24441 1eg9A 449 5.346 b.33.1.2,d.129.3.3 24443,41322 1f37A 110 5.400 c.47.1.11 33088 1g8kA 825 5.665 b.52.2.2,c.81.1.1 26920,35328 1twfL 70 5.765 g.41.9.2 112737 1ltlA 279 5.831 b.40.4.11 84701 1vm9A 111 5.961 b.33.1.1 108886 1v8yA 170 6.130 d.113.1.1 113581 1a7iA 81 6.207 g.39.1.3,g.39.1.3 45143,45144 1tiyA 164 6.514 c.97.1.2 107012 1ptq 50 6.686 1jd5A 124 6.687 g.52.1.1 66544 3bm4A 210 6.807 1n0zA 45 6.935 g.41.11.1 85247 2qkmB 266 7.060 2q3wA 111 7.115 b.33.1.1 139813 1ayoA 130 7.522 b.2.4.1 22431 1s72Z 73 7.701 g.41.8.1 105345 1sjgA 112 7.989 b.33.1.1 105647 3c7bA 417 7.990 1rfs 139 8.365 1fn8A 224 8.510 b.47.1.2 26012 1ma3A 253 8.973 c.31.1.5 78883 1pq7A 224 9.221 b.47.1.2 95002 1nscA 390 9.464 b.68.1.1 27591 1try 224 9.626 2jo6A 113 9.678 1ss3A 50 9.697 g.2.3.1 105975 1x6mA 196 9.97 b.88.1.4 114920 1lv3A 68 11.08 g.39.1.9 78231 3bk3C 67 11.26 2vrwB 406 11.32 1qxfA 66 12.18 g.41.8.4 96527 1j8eA 44 12.18 g.12.1.1 66437 2vqeR 88 12.26 2ivfA 976 12.43 2j015 60 12.56 1cl4A 60 12.92 g.40.1.1 45171 3c0dA 119 13.60 2fa8A 105 13.66 c.47.1.23 133185 1wkqA 164 14.22 c.97.1.2 109393 2uubR 88 14.88 a.4.8.1 139949 2nx8A 179 15.41 3cngA 189 15.60 2di0A 71 16.00 a.5.2.4 131521 2v3vA 723 16.35 6rxnA 45 16.83 g.41.5.1 45222 2hf1A 68 17.14 2ibtA 421 17.23 c.66.1.27,d.287.1.1 137205,137206 2yvpA 182 18.25 1ro5A 201 18.54 d.108.1.3 105023 1wwrA 171 18.79 c.97.1.2 121366 2i7rA 118 18.79 d.32.1.2 137102 2b5hA 200 18.86 b.82.1.19 127894 2napA 723 18.98 b.52.2.2,c.81.1.1 26926,35334 2bt6A 108 19.06 d.15.4.1 129152 2qjtA 352 19.07 1v54F 98 19.46 g.41.5.3 100327 1o8rA 94 21.10 d.234.1.1 86677 2za8A 167 21.55 1dat 174 21.58 2riqA 160 21.98 2occF 98 22.29 g.41.5.3 45256 1p6oA 161 22.37 c.97.1.2 94185 2vpzA 765 22.57 2oap1 511 22.93 2pveA 54 23.08 2orwA 184 23.19 1l3yA 41 23.63 g.3.11.6 73558 2a8nA 144 23.91 c.97.1.2 126408 1iroA 54 24.56 g.41.5.1 45223 1yk4A 52 24.98 1rb9A 52 25.28 g.41.5.1 45214 2fmlA 273 25.76 a.4.5.68,d.113.1.6 133778,133779 3bwwA 307 26.02 1b13A 54 26.10 g.41.5.1 45227 1gp0A 143 26.80 b.64.1.1 70300 2conA 79 27.30 g.41.15.1 130680 1r7sA 106 27.63 d.15.4.1 97207 1s5aA 150 27.76 d.17.4.10 98525 2v2kA 105 27.91 1v47A 349 28.22 b.122.1.3,c.26.1.5 100292,100293 2pvxA 54 29.01 2i5oA 39 29.51 1e3jA 352 29.62 b.35.1.2,c.2.1.1 24765,29781 1m2kA 249 30.55 c.31.1.5 84754 1jocA 125 30.60 g.50.1.1,h.1.21.1 66990,66991 1pl8A 356 30.97 b.35.1.2,c.2.1.1 94878,94879 2e7zA 727 31.12 2vm5A 106 33.88 1h8eG 272 35.21 c.49.2.1 60756 2a15A 139 35.27 d.17.4.3 125973 2a4nA 182 36.41 d.108.1.1 126159 2d8qA 70 36.73 g.85.1.1 131335 1vqoZ 83 36.79 g.41.8.1 120387 2g45A 129 38.27 2bs6A 90 38.51 3bidA 64 38.77 2poiA 94 38.87 1y9aA 360 39.15 2uvlA 96 39.40 2gqrA 237 39.67 2ejbA 189 40.60 1h0hA 977 41.26 b.52.2.2,c.81.1.1 76435,76436 1gz2A 142 41.30 d.169.1.1 83392 2aenA 164 41.85 1rb9 53 41.86 1jqbA 351 42.53 b.35.1.2,c.2.1.1 77151,77152 2jz8A 87 42.85 1dmmA 131 43.31 d.17.4.3 38114 2bngA 149 44.08 1sbzA 197 44.77 c.34.1.1 112068 2pmzP 48 44.77 1tuhA 156 45.80 d.17.4.11 107345 2ouiA 360 46.33 2iv2X 715 46.47 b.52.2.2,c.81.1.1 137714,137715 1m2dA 110 46.89 c.47.1.11 78476 2ih2A 421 47.11 2ck3G 272 48.16 c.49.2.1 130562 1xpaA 122 48.54 a.6.1.2,g.39.1.5 16308,45151 1o7kA 131 48.91 d.189.1.1 81144 2b5lC 222 49.16 2d13A 227 49.33 c.26.2.1 131121 2jroA 78 49.36 2qkdA 404 51.16 2vl6A 268 51.24 1avaC 181 51.66 b.42.4.1 25604 1jy2P 48 51.90 h.1.8.1 67442 2cy9A 140 52.10 d.38.1.5 131019 1mzbA 136 52.43 a.4.5.42 91497 1kevA 351 52.69 b.35.1.2,c.2.1.1 24749,29765 1twfB 1224 53.01 e.29.1.1 112726 2j2sA 72 53.32 1brfA 53 53.98 g.41.5.1 45236 1hdlA 55 53.99 g.68.1.2 65808 1mmcA 30 54.27 g.3.1.2 44061 2ci1A 275 54.28 1kte 105 54.70 1lluA 342 55.18 b.35.1.2,c.2.1.1 91064,91065 2fha 183 55.35 1zatA 250 56.08 b.160.1.1,d.335.1.1 124845,124846 1e79G 272 56.15 c.49.2.1 33158 1xakA 83 56.60 b.1.24.1 115037 1dvpA 220 57.28 a.118.9.2,g.50.1.1 19216,45358 1e6eB 128 57.47 d.15.4.1 59300 2baiA 32 57.99 g.87.1.1 128237 1jvbA 347 58.01 b.35.1.2,c.2.1.1 77181,77182 1v5nA 89 59.09 g.49.1.3 108380 2cs7A 55 59.33 d.9.2.1 130748 2dsmA 72 59.46 3c5kA 109 59.75 1x3zA 335 60.02 d.3.1.4 121673 1lb3A 182 60.05 a.25.1.1 77873 3d9tA 97 61.95 2iblA 130 62.13 1utyA 187 62.55 b.147.1.1 108036 1r4yA 136 63.61 d.1.1.3 97056 2qtzA 539 63.62 2jdiG 273 63.77 c.49.2.1 138272 2anpA 291 64.53 c.56.5.4 127056 2i2lA 142 64.96 1l2tA 235 64.98 c.37.1.12 73514 1se0A 116 65.13 g.52.1.1 98814 2qsxA 218 65.48 2bx9A 53 66.97 1sq9A 397 67.02 b.69.4.1 105889 2hcyA 347 67.03 1bmv2 374 67.40 1x3xA 82 67.47 2cttA 104 67.63 1opy 131 68.28 2adzA 178 68.29 b.55.1.1 126599 1sjwA 144 69.69 d.17.4.9 98899 2pw9A 268 69.77 1bu8A 452 69.89 b.12.1.2,c.69.1.19 23647,34795 2geyA 158 70.43 1r03A 182 70.48 a.25.1.1 104675 1wo3A 25 70.78 2yx6A 121 71.49 1olzA 663 71.61 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1kzfA 230 71.78 d.108.1.3 73354 1xx6A 191 71.95 c.37.1.24,g.39.1.14 116139,116140 2b06A 155 72.17 d.113.1.1 127624 1gl4A 285 72.19 d.22.1.2,g.3.11.5 65286,65287 1l8dA 112 72.37 h.4.12.1 73687 2iwgB 181 72.74 1x0tA 120 73.06 1zy7A 403 73.19 1lvoA 302 73.44 b.47.1.4 74284 3silA 379 73.65 b.68.1.1 27542 2jvmA 80 73.78 3c0fB 91 74.28 2gatA 66 74.40 g.39.1.1 45102 2e1xA 27 74.49 1t3vA 124 75.14 c.55.5.1 112232 1zccA 248 75.73 c.1.18.3 124903 1kqfA 1015 76.07 b.52.2.2,c.81.1.1 72871,72872 2csvA 72 76.11 1erdA 40 76.95 a.10.1.1 16362 1w70A 60 77.37 1vqo1 57 77.41 1j96A 323 77.77 c.1.7.1 71616 1b71A 191 77.79 a.25.1.1,g.41.5.1 16647,45246 2aqaA 63 78.22 g.41.16.1 127168 2amdA 311 78.32 2bv2A 83 78.52 1z6oA 212 79.21 a.25.1.1 124531 1z6oM 191 79.43 a.25.1.1 124543 2eppA 66 80.04 2gnrA 145 80.61 1x4sA 59 80.68 g.85.1.2 121697 1b87A 181 80.78 d.108.1.1 40797 2dsxA 52 81.91 g.41.5.1 131699 1lt3A 240 83.82 d.166.1.1 42230 2b3jA 159 83.85 c.97.1.2 127787 2pz0A 252 83.87 1pgl2 370 83.90 2yqpA 60 84.39 1bq9A 54 84.42 g.41.5.1 45238 1q3yA 42 84.98 g.40.1.1 104530 2hldG 278 84.99 1a73A 163 85.27 d.4.1.3 37145 2fiyA 309 86.03 e.59.1.1 133540 1xebA 150 86.08 d.108.1.1 115219 1xbtA 193 86.20 c.37.1.24,g.39.1.14 115080,115081 2p02A 396 86.28 1jjdA 55 86.96 g.46.1.1 63116 2hvwA 184 87.33 1ayfA 105 87.45 d.15.4.1 37684 1ul4A 94 87.52 g.72.1.1 99538 2i3hA 133 87.82 g.52.1.1 137023 2e58A 308 88.68 2fkiA 126 89.21 d.198.3.1 133657 3c7bB 366 89.59