# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.07055 g.44.1.4 130791 1vk6A 269 0.1328 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.2357 g.41.16.1 127135 2ausB 60 0.3209 1q33A 292 0.5712 d.113.1.1 95657 2e72A 49 1.144 2bmoA 447 1.430 b.33.1.2,d.129.3.3 128804,128805 1rlyA 60 1.524 g.41.3.1 104988 1dl6A 58 1.550 g.41.3.1 45207 2ckfA 454 1.856 2gbwA 454 1.908 2de6A 392 2.089 b.33.1.2,d.129.3.3 131415,131416 1z02A 446 2.127 2b1xA 470 2.491 b.33.1.2,d.129.3.3 127675,127676 1g8kA 825 5.215 b.52.2.2,c.81.1.1 26920,35328 2qtdA 105 5.441 1f37A 110 5.478 c.47.1.11 33088 1jj2Y 73 6.135 g.41.8.1 63110 3bm4A 210 6.824 1ptqA 50 6.991 g.49.1.1 45349 1jd5A 124 7.142 g.52.1.1 66544 1eu1A 780 7.163 b.52.2.2,c.81.1.1 26903,35311 1o7nA 449 7.735 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 7.941 b.33.1.2,d.129.3.3 24443,41322 1ltlA 279 8.051 b.40.4.11 84701 1tiyA 164 8.074 c.97.1.2 107012 1n0zA 45 8.220 g.41.11.1 85247 2ivfA 976 8.592 1ptq 50 9.455 2e4qA 109 9.486 1try 224 10.12 1fn8A 224 10.14 b.47.1.2 26012 1uliA 460 10.26 b.33.1.2,d.129.3.3 107921,107922 1a7iA 81 10.39 g.39.1.3,g.39.1.3 45143,45144 1rfs 139 10.48 1pq7A 224 10.52 b.47.1.2 95002 1x6mA 196 10.75 b.88.1.4 114920 1v8yA 170 11.06 d.113.1.1 113581 2i7fA 108 11.27 1twfL 70 11.35 g.41.9.2 112737 1ma3A 253 11.54 c.31.1.5 78883 2de6D 115 11.98 2q3wA 111 12.10 b.33.1.1 139813 1ss3A 50 12.69 g.2.3.1 105975 2qkmB 266 13.17 1fqtA 112 13.24 b.33.1.1 24441 2v3vA 723 13.32 2jo6A 113 13.32 1sjgA 112 13.85 b.33.1.1 105647 2rfkB 53 14.16 2vrwB 406 15.14 2j015 60 16.15 1s72Z 73 16.30 g.41.8.1 105345 1vm9A 111 17.55 b.33.1.1 108886 1ayoA 130 19.13 b.2.4.1 22431 2vpzA 765 19.71 1cl4A 60 19.76 g.40.1.1 45171 2di0A 71 19.98 a.5.2.4 131521 2napA 723 20.39 b.52.2.2,c.81.1.1 26926,35334 1o8rA 94 20.58 d.234.1.1 86677 2fa8A 105 20.85 c.47.1.23 133185 1wkqA 164 21.06 c.97.1.2 109393 6rxnA 45 21.36 g.41.5.1 45222 1wwrA 171 21.74 c.97.1.2 121366 2hf1A 68 22.06 2a8nA 144 22.07 c.97.1.2 126408 1nscA 390 22.32 b.68.1.1 27591 2qjtA 352 22.37 3cngA 189 22.56 2yvpA 182 22.99 2bt6A 108 23.09 d.15.4.1 129152 2nx8A 179 23.44 1v54F 98 23.59 g.41.5.3 100327 3c7bA 417 24.82 3bk3C 67 25.77 2occF 98 26.23 g.41.5.3 45256 2vqeR 88 26.90 1h0hA 977 28.19 b.52.2.2,c.81.1.1 76435,76436 2orwA 184 28.21 2riqA 160 28.23 1l3yA 41 29.31 g.3.11.6 73558 3c0dA 119 31.27 2ibtA 421 31.99 c.66.1.27,d.287.1.1 137205,137206 2oap1 511 32.04 1yk4A 52 32.69 2pveA 54 33.10 1lv3A 68 33.16 g.39.1.9 78231 1gz2A 142 33.27 d.169.1.1 83392 1r7sA 106 33.30 d.15.4.1 97207 2vm5A 106 33.64 1p6oA 161 33.72 c.97.1.2 94185 1gp0A 143 34.22 b.64.1.1 70300 2iwgB 181 35.16 2uubR 88 35.38 a.4.8.1 139949 2e7zA 727 35.44 1rb9A 52 35.73 g.41.5.1 45214 1iroA 54 36.12 g.41.5.1 45223 1xakA 83 36.50 b.1.24.1 115037 1j8eA 44 36.77 g.12.1.1 66437 1ro5A 201 36.79 d.108.1.3 105023 1m2kA 249 36.93 c.31.1.5 84754 2i7rA 118 36.93 d.32.1.2 137102 2b5hA 200 37.59 b.82.1.19 127894 1b13A 54 38.35 g.41.5.1 45227 1qxfA 66 38.83 g.41.8.4 96527 3bwwA 307 39.51 2uvlA 96 40.06 2d13A 227 40.51 c.26.2.1 131121 1jocA 125 40.64 g.50.1.1,h.1.21.1 66990,66991 2pvxA 54 41.48 1v47A 349 42.47 b.122.1.3,c.26.1.5 100292,100293 2poiA 94 42.72 1dat 174 44.02 2i5oA 39 44.12 2i2lA 142 46.28 2za8A 167 46.36 2fmlA 273 46.85 a.4.5.68,d.113.1.6 133778,133779 2iv2X 715 46.93 b.52.2.2,c.81.1.1 137714,137715 1m2dA 110 47.12 c.47.1.11 78476 2g45A 129 47.73 1h8eG 272 49.38 c.49.2.1 60756 2anpA 291 49.71 c.56.5.4 127056 2jz8A 87 49.91 2b5lC 222 51.08 1zatA 250 52.21 b.160.1.1,d.335.1.1 124845,124846 2d8qA 70 54.48 g.85.1.1 131335 1r4yA 136 54.51 d.1.1.3 97056 1e3jA 352 54.91 b.35.1.2,c.2.1.1 24765,29781 2vl6A 268 55.65 2bv2A 83 55.87 1mzbA 136 56.40 a.4.5.42 91497 2conA 79 57.24 g.41.15.1 130680 3d9tA 97 58.88 2ejbA 189 59.04 1pl8A 356 59.05 b.35.1.2,c.2.1.1 94878,94879 2b06A 155 60.37 d.113.1.1 127624 1mmcA 30 60.66 g.3.1.2 44061 2baiA 32 61.58 g.87.1.1 128237 2j01V 101 62.35 2ck3G 272 63.41 c.49.2.1 130562 1y9aA 360 64.15 2a4nA 182 64.17 d.108.1.1 126159 1rb9 53 64.19 1o7kA 131 66.25 d.189.1.1 81144 1se0A 116 66.27 g.52.1.1 98814 1gl4A 285 68.09 d.22.1.2,g.3.11.5 65286,65287 3c5kA 109 69.07 1sbzA 197 70.58 c.34.1.1 112068 1wba 175 71.69 1bmv2 374 71.75 3pte 349 71.99 2ouiA 360 72.52 1xpaA 122 72.64 a.6.1.2,g.39.1.5 16308,45151 1jvbA 347 72.85 b.35.1.2,c.2.1.1 77181,77182 1x3zA 335 73.25 d.3.1.4 121673 2p02A 396 74.54 2gagA 965 74.56 1e6eB 128 74.66 d.15.4.1 59300 1hdlA 55 75.07 g.68.1.2 65808 1s5aA 150 75.18 d.17.4.10 98525 2qsxA 218 75.35 2adzA 178 75.46 b.55.1.1 126599 1w70A 60 75.75 2qtzA 539 75.85 2pmzP 48 75.99 3bidA 64 78.60 1ul4A 94 78.79 g.72.1.1 99538 2jdiG 273 79.19 c.49.2.1 138272 1jy2P 48 79.79 h.1.8.1 67442 1yqdA 366 79.98 2j2sA 72 80.12 2cttA 104 80.85 1e79G 272 81.07 c.49.2.1 33158 1bouB 302 81.96 c.56.6.1 33859 1avaC 181 82.44 b.42.4.1 25604 1pgl2 370 82.54 1brfA 53 82.86 g.41.5.1 45236 1zccA 248 82.92 c.1.18.3 124903 1dvpA 220 83.60 a.118.9.2,g.50.1.1 19216,45358 2jroA 78 83.68 1fleI 57 84.01 g.3.14.1 44352 1twfB 1224 84.13 e.29.1.1 112726 1y5iA 1246 84.56 b.52.2.2,c.81.1.1 122639,122640 1iycA 36 84.68 g.31.1.2 83782 2csvA 72 85.32 2nq2C 253 85.57 1rtuA 114 86.25 d.1.1.4 36139 1g73C 121 88.60 g.52.1.1 45375