# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.06599 g.44.1.4 130791 1vk6A 269 0.1161 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.2373 g.41.16.1 127135 2ausB 60 0.3519 1q33A 292 0.6054 d.113.1.1 95657 2e72A 49 1.136 2bmoA 447 1.315 b.33.1.2,d.129.3.3 128804,128805 2gbwA 454 1.699 1dl6A 58 1.711 g.41.3.1 45207 2b1xA 470 1.731 b.33.1.2,d.129.3.3 127675,127676 1rlyA 60 1.791 g.41.3.1 104988 2ckfA 454 1.816 2de6A 392 2.094 b.33.1.2,d.129.3.3 131415,131416 1z02A 446 2.150 1g8kA 825 5.052 b.52.2.2,c.81.1.1 26920,35328 3bm4A 210 7.030 1jj2Y 73 7.497 g.41.8.1 63110 1eu1A 780 7.526 b.52.2.2,c.81.1.1 26903,35311 1o7nA 449 7.688 b.33.1.2,d.129.3.3 81162,81163 1ptqA 50 7.747 g.49.1.1 45349 1eg9A 449 7.905 b.33.1.2,d.129.3.3 24443,41322 1ltlA 279 7.910 b.40.4.11 84701 1jd5A 124 8.395 g.52.1.1 66544 1f37A 110 8.420 c.47.1.11 33088 1n0zA 45 8.521 g.41.11.1 85247 2qtdA 105 8.705 1fn8A 224 9.191 b.47.1.2 26012 1tiyA 164 9.313 c.97.1.2 107012 1pq7A 224 9.528 b.47.1.2 95002 1rfs 139 9.654 1uliA 460 9.702 b.33.1.2,d.129.3.3 107921,107922 1try 224 9.813 2ivfA 976 10.47 1twfL 70 10.59 g.41.9.2 112737 1ptq 50 11.11 1a7iA 81 11.36 g.39.1.3,g.39.1.3 45143,45144 2rfkB 53 12.03 1ss3A 50 12.57 g.2.3.1 105975 2e4qA 109 13.22 2qkmB 266 13.59 2jo6A 113 13.74 1x6mA 196 14.29 b.88.1.4 114920 2q3wA 111 14.46 b.33.1.1 139813 1sjgA 112 14.82 b.33.1.1 105647 2vrwB 406 14.91 2de6D 115 15.15 2i7fA 108 15.71 1v8yA 170 15.83 d.113.1.1 113581 2v3vA 723 17.36 2j015 60 17.79 1vm9A 111 17.91 b.33.1.1 108886 1ma3A 253 18.07 c.31.1.5 78883 1s72Z 73 18.11 g.41.8.1 105345 1o8rA 94 18.68 d.234.1.1 86677 1fqtA 112 18.90 b.33.1.1 24441 1cl4A 60 22.92 g.40.1.1 45171 2vpzA 765 23.01 6rxnA 45 23.01 g.41.5.1 45222 2vqeR 88 23.37 2di0A 71 24.08 a.5.2.4 131521 3c7bA 417 24.20 1nscA 390 24.35 b.68.1.1 27591 3bk3C 67 24.86 3cngA 189 24.91 2napA 723 25.75 b.52.2.2,c.81.1.1 26926,35334 2yvpA 182 26.83 1v54F 98 28.56 g.41.5.3 100327 2bt6A 108 28.63 d.15.4.1 129152 2ibtA 421 28.84 c.66.1.27,d.287.1.1 137205,137206 2hf1A 68 28.87 2qjtA 352 29.19 1wkqA 164 29.43 c.97.1.2 109393 1ayoA 130 30.39 b.2.4.1 22431 2orwA 184 31.89 2nx8A 179 31.90 1l3yA 41 32.55 g.3.11.6 73558 2occF 98 32.66 g.41.5.3 45256 1h0hA 977 33.30 b.52.2.2,c.81.1.1 76435,76436 1p6oA 161 34.05 c.97.1.2 94185 1ro5A 201 34.09 d.108.1.3 105023 2riqA 160 34.33 1lv3A 68 34.42 g.39.1.9 78231 1yk4A 52 34.84 2i7rA 118 35.02 d.32.1.2 137102 1wwrA 171 35.42 c.97.1.2 121366 2fa8A 105 35.79 c.47.1.23 133185 2oap1 511 36.55 2e7zA 727 36.81 1j8eA 44 37.66 g.12.1.1 66437 2a8nA 144 38.17 c.97.1.2 126408 2uubR 88 38.62 a.4.8.1 139949 3bwwA 307 38.66 1v47A 349 38.76 b.122.1.3,c.26.1.5 100292,100293 1gp0A 143 39.25 b.64.1.1 70300 2vm5A 106 39.96 1r7sA 106 40.72 d.15.4.1 97207 2pveA 54 41.72 1jocA 125 43.30 g.50.1.1,h.1.21.1 66990,66991 1rb9A 52 43.45 g.41.5.1 45214 2b5lC 222 43.63 1m2kA 249 43.91 c.31.1.5 84754 3c0dA 119 44.08 2pvxA 54 44.43 2fmlA 273 44.71 a.4.5.68,d.113.1.6 133778,133779 1xakA 83 45.29 b.1.24.1 115037 1iroA 54 45.40 g.41.5.1 45223 2i2lA 142 46.36 1b13A 54 47.25 g.41.5.1 45227 2b5hA 200 48.19 b.82.1.19 127894 1gz2A 142 48.70 d.169.1.1 83392 2d13A 227 48.71 c.26.2.1 131121 2j01V 101 49.26 1qxfA 66 50.44 g.41.8.4 96527 2iv2X 715 51.04 b.52.2.2,c.81.1.1 137714,137715 2poiA 94 51.34 2jz8A 87 53.20 2uvlA 96 54.53 1o7kA 131 55.11 d.189.1.1 81144 2i5oA 39 57.82 2d8qA 70 58.93 g.85.1.1 131335 2g45A 129 59.06 2iwgB 181 59.74 2bv2A 83 62.40 1mmcA 30 67.35 g.3.1.2 44061 2a4nA 182 67.35 d.108.1.1 126159 1r4yA 136 68.09 d.1.1.3 97056 2anpA 291 68.77 c.56.5.4 127056 2qtzA 539 69.10 2gagA 965 70.71 2ck3G 272 71.39 c.49.2.1 130562 1zatA 250 72.12 b.160.1.1,d.335.1.1 124845,124846 1rb9 53 72.30 2conA 79 73.10 g.41.15.1 130680 1m2dA 110 74.03 c.47.1.11 78476 1wba 175 74.53 1mzbA 136 75.09 a.4.5.42 91497 1kte 105 76.23 1hdlA 55 76.69 g.68.1.2 65808 2p02A 396 78.05 2baiA 32 78.91 g.87.1.1 128237 1jy2P 48 81.20 h.1.8.1 67442 2pmzP 48 81.61 3d9tA 97 82.99 2ih2A 421 83.21 1rtuA 114 84.26 d.1.1.4 36139 1y5iA 1246 84.28 b.52.2.2,c.81.1.1 122639,122640 1h8eG 272 84.65 c.49.2.1 60756 1brfA 53 84.88 g.41.5.1 45236 1dvpA 220 85.15 a.118.9.2,g.50.1.1 19216,45358 1wo3A 25 86.79 2ejbA 189 87.32 1x3zA 335 87.73 d.3.1.4 121673 1pl8A 356 87.78 b.35.1.2,c.2.1.1 94878,94879 1xpaA 122 88.26 a.6.1.2,g.39.1.5 16308,45151 2jroA 78 88.54 2b06A 155 88.75 d.113.1.1 127624 2vl6A 268 88.77 1bmv2 374 89.50 1l8dA 112 89.70 h.4.12.1 73687