# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vk6A 269 0.3749 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2ct7A 86 0.7192 g.44.1.4 130791 2apoB 60 1.808 g.41.16.1 127135 1q33A 292 1.815 d.113.1.1 95657 2ausB 60 2.069 2bmoA 447 2.348 b.33.1.2,d.129.3.3 128804,128805 1rlyA 60 5.012 g.41.3.1 104988 3bm4A 210 5.189 1dl6A 58 6.438 g.41.3.1 45207 2e72A 49 7.492 1x6mA 196 8.146 b.88.1.4 114920 1ma3A 253 12.63 c.31.1.5 78883 2di0A 71 12.99 a.5.2.4 131521 1gz2A 142 13.27 d.169.1.1 83392 2j015 60 13.98 3c7bA 417 14.25 1tiyA 164 14.84 c.97.1.2 107012 1eu1A 780 15.73 b.52.2.2,c.81.1.1 26903,35311 1n0zA 45 15.96 g.41.11.1 85247 2gbwA 454 18.00 2b1xA 470 18.03 b.33.1.2,d.129.3.3 127675,127676 1f37A 110 18.85 c.47.1.11 33088 1ltlA 279 19.57 b.40.4.11 84701 2ckfA 454 20.60 1o7nA 449 21.50 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 21.94 b.33.1.2,d.129.3.3 24443,41322 1v54F 98 22.45 g.41.5.3 100327 2de6A 392 23.76 b.33.1.2,d.129.3.3 131415,131416 1jd5A 124 25.54 g.52.1.1 66544 2qjtA 352 25.95 2i7fA 108 26.56 1uliA 460 26.90 b.33.1.2,d.129.3.3 107921,107922 2eo0A 147 27.57 2occF 98 33.71 g.41.5.3 45256 2qkmB 266 34.40 1vm9A 111 34.41 b.33.1.1 108886 1fqtA 112 34.53 b.33.1.1 24441 1z02A 446 34.79 1twfL 70 34.94 g.41.9.2 112737 1jj2Y 73 37.06 g.41.8.1 63110 1v8yA 170 37.26 d.113.1.1 113581 2qtdA 105 37.87 2de6D 115 39.19 1zccA 248 40.67 c.1.18.3 124903 2jo6A 113 44.24 2ibtA 421 45.17 c.66.1.27,d.287.1.1 137205,137206 1wqkA 42 45.18 6rxnA 45 45.36 g.41.5.1 45222 2fa8A 105 50.05 c.47.1.23 133185 1r4yA 136 50.09 d.1.1.3 97056 2vqeR 88 50.34 2fmlA 273 51.57 a.4.5.68,d.113.1.6 133778,133779 2bngA 149 56.13 1fn8A 224 57.23 b.47.1.2 26012 1g8kA 825 58.57 b.52.2.2,c.81.1.1 26920,35328 1ayoA 130 58.90 b.2.4.1 22431 1yk4A 52 60.60 2q3wA 111 60.87 b.33.1.1 139813 1wkqA 164 61.19 c.97.1.2 109393 2vpzA 765 61.24 3cngA 189 61.85 1pq7A 224 62.72 b.47.1.2 95002 2pveA 54 63.04 1sjgA 112 63.24 b.33.1.1 105647 1mfwA 107 64.94 d.15.11.1 84940 1iroA 54 66.29 g.41.5.1 45223 1s72Z 73 66.95 g.41.8.1 105345 1v47A 349 67.04 b.122.1.3,c.26.1.5 100292,100293 1qddA 144 67.16 d.169.1.1 42324 2e4qA 109 68.71 2uubR 88 69.66 a.4.8.1 139949 1aqzA 149 69.92 d.1.1.3 36238 1m2dA 110 70.31 c.47.1.11 78476 1b13A 54 75.07 g.41.5.1 45227 1rtuA 114 75.90 d.1.1.4 36139 1rb9A 52 76.98 g.41.5.1 45214 1try 224 77.03 1r7sA 106 78.78 d.15.4.1 97207 2riqA 160 79.33 2cttA 104 82.38 3c0fB 91 83.49 1o8rA 94 83.66 d.234.1.1 86677 2a1vA 144 85.13 d.198.3.1 126019 2b5hA 200 85.83 b.82.1.19 127894 2jroA 78 85.89 1twfB 1224 87.95 e.29.1.1 112726