# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.09599 g.44.1.4 130791 1vk6A 269 0.2610 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.2884 g.41.16.1 127135 2ausB 60 0.3817 1q33A 292 0.4800 d.113.1.1 95657 2e72A 49 0.8742 1z02A 446 1.523 2de6A 392 1.758 b.33.1.2,d.129.3.3 131415,131416 2bmoA 447 1.761 b.33.1.2,d.129.3.3 128804,128805 2qtdA 105 1.873 2b1xA 470 2.071 b.33.1.2,d.129.3.3 127675,127676 1rlyA 60 2.113 g.41.3.1 104988 2gbwA 454 2.163 2ckfA 454 2.328 1dl6A 58 2.490 g.41.3.1 45207 2i7fA 108 4.502 2e4qA 109 5.612 1v8yA 170 5.616 d.113.1.1 113581 1ltlA 279 6.155 b.40.4.11 84701 1jj2Y 73 6.166 g.41.8.1 63110 1f37A 110 6.646 c.47.1.11 33088 2de6D 115 6.791 1sjgA 112 7.065 b.33.1.1 105647 1eu1A 780 7.346 b.52.2.2,c.81.1.1 26903,35311 1fqtA 112 7.347 b.33.1.1 24441 1vm9A 111 8.744 b.33.1.1 108886 1twfL 70 8.908 g.41.9.2 112737 1tiyA 164 8.915 c.97.1.2 107012 1o7nA 449 9.119 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 9.438 b.33.1.2,d.129.3.3 24443,41322 1uliA 460 9.728 b.33.1.2,d.129.3.3 107921,107922 3bm4A 210 10.00 1g8kA 825 10.57 b.52.2.2,c.81.1.1 26920,35328 2rfkB 53 10.69 1n0zA 45 10.92 g.41.11.1 85247 1nscA 390 11.16 b.68.1.1 27591 2fmlA 273 11.27 a.4.5.68,d.113.1.6 133778,133779 1ayoA 130 11.61 b.2.4.1 22431 1a7iA 81 11.82 g.39.1.3,g.39.1.3 45143,45144 2q3wA 111 12.78 b.33.1.1 139813 1ptqA 50 12.79 g.49.1.1 45349 2jo6A 113 13.13 3c7bA 417 13.35 1pq7A 224 13.96 b.47.1.2 95002 1try 224 13.96 1fn8A 224 13.98 b.47.1.2 26012 1s72Z 73 14.26 g.41.8.1 105345 2yvpA 182 14.29 1x6mA 196 14.39 b.88.1.4 114920 1rfs 139 14.68 1ro5A 201 15.01 d.108.1.3 105023 1jd5A 124 15.25 g.52.1.1 66544 1s5aA 150 16.24 d.17.4.10 98525 2qkmB 266 16.46 2bngA 149 16.52 2ivfA 976 17.36 1qxfA 66 17.49 g.41.8.4 96527 3cngA 189 17.62 1wkqA 164 18.23 c.97.1.2 109393 1ptq 50 18.67 2nx8A 179 19.90 2a4nA 182 20.08 d.108.1.1 126159 2j015 60 20.34 1ss3A 50 20.49 g.2.3.1 105975 2v3vA 723 20.78 1ma3A 253 21.03 c.31.1.5 78883 3c0dA 119 21.04 1cl4A 60 22.20 g.40.1.1 45171 2ibtA 421 22.46 c.66.1.27,d.287.1.1 137205,137206 2vqeR 88 22.99 1lv3A 68 23.43 g.39.1.9 78231 2hf1A 68 23.73 1dat 174 24.30 1tuhA 156 25.57 d.17.4.11 107345 1j8eA 44 25.68 g.12.1.1 66437 2vpzA 765 26.83 6rxnA 45 27.00 g.41.5.1 45222 2i7rA 118 27.63 d.32.1.2 137102 2oap1 511 28.13 2napA 723 28.39 b.52.2.2,c.81.1.1 26926,35334 3bk3C 67 28.57 1kzfA 230 29.43 d.108.1.3 73354 2za8A 167 29.65 1v54F 98 29.70 g.41.5.3 100327 1yk4A 52 29.99 2a8nA 144 30.68 c.97.1.2 126408 2vrwB 406 31.41 1l3yA 41 31.83 g.3.11.6 73558 2fa8A 105 33.12 c.47.1.23 133185 2occF 98 33.74 g.41.5.3 45256 1sjwA 144 33.75 d.17.4.9 98899 1p6oA 161 34.27 c.97.1.2 94185 2di0A 71 34.58 a.5.2.4 131521 1dmmA 131 34.80 d.17.4.3 38114 1gp0A 143 35.72 b.64.1.1 70300 2riqA 160 36.10 2pveA 54 36.23 3bwwA 307 36.42 2uubR 88 36.57 a.4.8.1 139949 2orwA 184 36.64 1rb9A 52 36.66 g.41.5.1 45214 2bv2A 83 36.68 2geyA 158 37.14 2e7zA 727 37.34 1o8rA 94 37.78 d.234.1.1 86677 1nwwA 149 37.86 d.17.4.8 86306 2qjtA 352 38.78 1iroA 54 39.20 g.41.5.1 45223 1wwrA 171 39.87 c.97.1.2 121366 1b13A 54 40.94 g.41.5.1 45227 2bt6A 108 41.21 d.15.4.1 129152 2pvxA 54 41.26 1b87A 181 41.86 d.108.1.1 40797 2jroA 78 43.19 2b5hA 200 43.58 b.82.1.19 127894 1r7sA 106 44.71 d.15.4.1 97207 2bs6A 90 44.90 2d8qA 70 45.51 g.85.1.1 131335 2g0bA 198 47.45 1ixlA 131 47.81 d.38.1.5 90717 1h0hA 977 47.89 b.52.2.2,c.81.1.1 76435,76436 2fkiA 126 48.47 d.198.3.1 133657 2iv2X 715 49.00 b.52.2.2,c.81.1.1 137714,137715 2i2lA 142 49.78 1m2kA 249 50.75 c.31.1.5 84754 2f0xA 148 51.25 d.38.1.5 132673 1v47A 349 51.57 b.122.1.3,c.26.1.5 100292,100293 2aenA 164 53.07 2ooxA 137 53.48 1m2dA 110 53.87 c.47.1.11 78476 1brfA 53 54.14 g.41.5.1 45236 2a15A 139 54.95 d.17.4.3 125973 2gqrA 237 55.07 1opy 131 55.14 2pmzP 48 55.49 2i6cA 160 56.09 d.108.1.1 137095 1lb3A 182 56.13 a.25.1.1 77873 1xebA 150 56.76 d.108.1.1 115219 1hdlA 55 57.75 g.68.1.2 65808 3bidA 64 57.97 2conA 79 59.75 g.41.15.1 130680 2i9sA 97 60.29 1gheA 177 61.28 d.108.1.1 76222 2d13A 227 61.42 c.26.2.1 131121 1mmcA 30 61.73 g.3.1.2 44061 2qtzA 539 61.97 2fha 183 63.35 1zccA 248 63.54 c.1.18.3 124903 2qkdA 404 64.21 1e3dB 542 64.88 e.18.1.1 59189 1a73A 163 65.43 d.4.1.3 37145 2jz8A 87 65.57 1vqoZ 83 65.90 g.41.8.1 120387 2b5lC 222 66.03 2i5oA 39 67.35 1utyA 187 67.46 b.147.1.1 108036 3c7bB 366 67.64 2b06A 155 68.10 d.113.1.1 127624 2ih2A 421 68.17 1zatA 250 68.18 b.160.1.1,d.335.1.1 124845,124846 1sbzA 197 68.27 c.34.1.1 112068 1xakA 83 68.28 b.1.24.1 115037 1pl8A 356 68.88 b.35.1.2,c.2.1.1 94878,94879 1w70A 60 68.92 1e3jA 352 69.58 b.35.1.2,c.2.1.1 24765,29781 1lvoA 302 69.89 b.47.1.4 74284 1wo3A 25 70.77 1y7rA 133 70.78 d.108.1.1 122716 2v2kA 105 72.18 1rb9 53 72.21 2g2nA 114 73.66 2g45A 129 74.05 2vl6A 268 74.33 2ck3G 272 76.30 c.49.2.1 130562 2cy9A 140 76.31 d.38.1.5 131019 1kte 105 76.67 2ejbA 189 77.21 1olzA 663 77.74 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1xpaA 122 78.95 a.6.1.2,g.39.1.5 16308,45151 1wluA 136 81.33 d.38.1.5 121015 2cnqA 306 82.52 d.143.1.1 130646 1gl4A 285 83.85 d.22.1.2,g.3.11.5 65286,65287 2b3jA 159 84.31 c.97.1.2 127787 1sdwA 314 84.60 b.121.1.2,b.121.1.2 98810,98811 1z6oM 191 84.80 a.25.1.1 124543 2csvA 72 84.98 1s1pA 331 84.99 c.1.7.1 98350 1twfB 1224 85.19 e.29.1.1 112726 1o13A 136 85.29 c.55.5.1 80762 1yocA 147 85.82 d.38.1.5 123778 2vm5A 106 86.26 1j96A 323 86.42 c.1.7.1 71616 2i8tA 167 87.02 1r4yA 136 89.42 d.1.1.3 97056