# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.09378 g.44.1.4 130791 1vk6A 269 0.2208 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.2769 g.41.16.1 127135 2ausB 60 0.3740 1q33A 292 0.7748 d.113.1.1 95657 2e72A 49 1.079 2bmoA 447 1.990 b.33.1.2,d.129.3.3 128804,128805 1rlyA 60 2.019 g.41.3.1 104988 1dl6A 58 2.206 g.41.3.1 45207 2gbwA 454 2.375 2b1xA 470 2.535 b.33.1.2,d.129.3.3 127675,127676 2ckfA 454 2.637 2qtdA 105 2.648 2de6A 392 2.866 b.33.1.2,d.129.3.3 131415,131416 1z02A 446 2.991 1ltlA 279 5.411 b.40.4.11 84701 1tiyA 164 6.823 c.97.1.2 107012 1jj2Y 73 7.579 g.41.8.1 63110 2i7fA 108 8.530 1eu1A 780 8.749 b.52.2.2,c.81.1.1 26903,35311 1g8kA 825 9.441 b.52.2.2,c.81.1.1 26920,35328 2e4qA 109 9.649 2qkmB 266 9.659 2de6D 115 9.97 1o7nA 449 10.01 b.33.1.2,d.129.3.3 81162,81163 1eg9A 449 10.19 b.33.1.2,d.129.3.3 24443,41322 1v8yA 170 10.34 d.113.1.1 113581 3bm4A 210 10.49 1uliA 460 10.66 b.33.1.2,d.129.3.3 107921,107922 1ptqA 50 10.81 g.49.1.1 45349 1sjgA 112 10.82 b.33.1.1 105647 1twfL 70 10.97 g.41.9.2 112737 1n0zA 45 10.99 g.41.11.1 85247 1jd5A 124 11.12 g.52.1.1 66544 1f37A 110 12.02 c.47.1.11 33088 2fmlA 273 12.49 a.4.5.68,d.113.1.6 133778,133779 1a7iA 81 12.68 g.39.1.3,g.39.1.3 45143,45144 2ivfA 976 12.76 2jo6A 113 13.31 2rfkB 53 13.66 1ss3A 50 13.95 g.2.3.1 105975 1fqtA 112 14.27 b.33.1.1 24441 1try 224 14.48 2qjtA 352 15.01 1fn8A 224 15.11 b.47.1.2 26012 2q3wA 111 15.15 b.33.1.1 139813 1pq7A 224 15.25 b.47.1.2 95002 1wkqA 164 15.25 c.97.1.2 109393 1vm9A 111 15.26 b.33.1.1 108886 1x6mA 196 15.38 b.88.1.4 114920 1s72Z 73 15.46 g.41.8.1 105345 1dat 174 15.86 1ptq 50 16.18 2j015 60 17.98 1rfs 139 18.95 2v3vA 723 19.26 2za8A 167 19.92 1p6oA 161 19.96 c.97.1.2 94185 1ma3A 253 20.11 c.31.1.5 78883 2nx8A 179 21.40 1nscA 390 21.54 b.68.1.1 27591 2a8nA 144 21.76 c.97.1.2 126408 1cl4A 60 22.24 g.40.1.1 45171 3cngA 189 22.27 2vqeR 88 23.23 2yvpA 182 23.25 1v54F 98 23.56 g.41.5.3 100327 1lv3A 68 24.90 g.39.1.9 78231 2occF 98 25.42 g.41.5.3 45256 1gz2A 142 27.44 d.169.1.1 83392 1qxfA 66 27.59 g.41.8.4 96527 2vrwB 406 27.61 2fa8A 105 27.99 c.47.1.23 133185 3c7bA 417 28.34 2vpzA 765 28.34 6rxnA 45 30.16 g.41.5.1 45222 1ayoA 130 30.63 b.2.4.1 22431 2di0A 71 31.36 a.5.2.4 131521 1wwrA 171 32.36 c.97.1.2 121366 1j8eA 44 32.38 g.12.1.1 66437 2napA 723 32.39 b.52.2.2,c.81.1.1 26926,35334 3bk3C 67 32.79 1ro5A 201 32.81 d.108.1.3 105023 2uubR 88 33.21 a.4.8.1 139949 1l3yA 41 33.50 g.3.11.6 73558 2orwA 184 34.02 3c0dA 119 35.20 3bwwA 307 35.27 1h0hA 977 35.36 b.52.2.2,c.81.1.1 76435,76436 2hf1A 68 35.61 1o8rA 94 35.68 d.234.1.1 86677 1yk4A 52 36.40 2ibtA 421 37.17 c.66.1.27,d.287.1.1 137205,137206 1m2kA 249 37.54 c.31.1.5 84754 1lb3A 182 38.04 a.25.1.1 77873 2riqA 160 39.48 2bv2A 83 39.71 2bt6A 108 40.35 d.15.4.1 129152 2e7zA 727 40.86 2oap1 511 41.01 1rb9A 52 41.12 g.41.5.1 45214 1r7sA 106 41.20 d.15.4.1 97207 2pveA 54 41.85 2i7rA 118 42.95 d.32.1.2 137102 2fha 183 43.29 1iroA 54 45.35 g.41.5.1 45223 2iv2X 715 46.72 b.52.2.2,c.81.1.1 137714,137715 1b13A 54 48.22 g.41.5.1 45227 2b5lC 222 48.96 2d8qA 70 49.47 g.85.1.1 131335 1mmcA 30 49.78 g.3.1.2 44061 1gp0A 143 51.06 b.64.1.1 70300 2b5hA 200 51.33 b.82.1.19 127894 2i2lA 142 51.50 2b06A 155 52.02 d.113.1.1 127624 1xakA 83 52.19 b.1.24.1 115037 2pvxA 54 53.60 1z6oM 191 54.17 a.25.1.1 124543 2d13A 227 54.91 c.26.2.1 131121 1zccA 248 55.72 c.1.18.3 124903 1z6oA 212 56.54 a.25.1.1 124531 2pmzP 48 57.69 2vm5A 106 58.96 2qtzA 539 59.07 1pl8A 356 63.22 b.35.1.2,c.2.1.1 94878,94879 1r03A 182 63.98 a.25.1.1 104675 2jz8A 87 65.58 1olzA 663 66.02 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 2uvlA 96 66.39 1v47A 349 66.80 b.122.1.3,c.26.1.5 100292,100293 2g45A 129 67.12 2jroA 78 67.64 2conA 79 68.70 g.41.15.1 130680 2fkiA 126 69.30 d.198.3.1 133657 2a4nA 182 69.45 d.108.1.1 126159 2j01V 101 69.63 2i8tA 167 70.06 2b3jA 159 71.86 c.97.1.2 127787 2ejbA 189 72.13 1sbzA 197 73.21 c.34.1.1 112068 1e3jA 352 73.36 b.35.1.2,c.2.1.1 24765,29781 1wba 175 73.67 2poiA 94 73.74 2qsxA 218 78.10 1uwvA 433 78.27 b.40.4.12,c.66.1.40 100128,100129 2vl6A 268 78.98 1lluA 342 79.35 b.35.1.2,c.2.1.1 91064,91065 1wo3A 25 79.38 2iwgB 181 79.56 1hdlA 55 79.82 g.68.1.2 65808 1avaC 181 80.06 b.42.4.1 25604 2baiA 32 80.87 g.87.1.1 128237 3c7bB 366 81.12 1s5aA 150 82.22 d.17.4.10 98525 1rb9 53 82.24 2csvA 72 82.61 1z3aA 168 82.95 c.97.1.2 124396 1dgwX 79 84.28 b.82.1.2 28091 1brfA 53 84.59 g.41.5.1 45236 2qkdA 404 84.76 1jy2P 48 85.35 h.1.8.1 67442 1zatA 250 86.88 b.160.1.1,d.335.1.1 124845,124846 2i5oA 39 87.37 2ck3G 272 88.83 c.49.2.1 130562