# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.1389 g.44.1.4 130791 1vk6A 269 0.2911 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.3622 g.41.16.1 127135 2ausB 60 0.6314 1q33A 292 1.496 d.113.1.1 95657 2e72A 49 1.551 1rlyA 60 3.499 g.41.3.1 104988 2bmoA 447 3.674 b.33.1.2,d.129.3.3 128804,128805 1dl6A 58 4.291 g.41.3.1 45207 2ckfA 454 4.655 2b1xA 470 4.826 b.33.1.2,d.129.3.3 127675,127676 2de6A 392 4.871 b.33.1.2,d.129.3.3 131415,131416 2gbwA 454 4.911 1z02A 446 5.253 1tiyA 164 8.972 c.97.1.2 107012 1jj2Y 73 12.44 g.41.8.1 63110 1jd5A 124 12.52 g.52.1.1 66544 1ltlA 279 13.00 b.40.4.11 84701 2qkmB 266 13.60 1n0zA 45 14.05 g.41.11.1 85247 1f37A 110 14.61 c.47.1.11 33088 1g8kA 825 15.35 b.52.2.2,c.81.1.1 26920,35328 1ptqA 50 15.89 g.49.1.1 45349 1rfs 139 16.17 2qtdA 105 16.20 1fn8A 224 18.34 b.47.1.2 26012 1x6mA 196 18.90 b.88.1.4 114920 1pq7A 224 19.47 b.47.1.2 95002 2qjtA 352 20.07 1try 224 20.17 1wkqA 164 20.98 c.97.1.2 109393 1eu1A 780 21.20 b.52.2.2,c.81.1.1 26903,35311 1o7nA 449 22.26 b.33.1.2,d.129.3.3 81162,81163 2nx8A 179 22.53 1twfL 70 22.70 g.41.9.2 112737 1eg9A 449 23.41 b.33.1.2,d.129.3.3 24443,41322 1a7iA 81 23.65 g.39.1.3,g.39.1.3 45143,45144 1ptq 50 24.01 2q3wA 111 24.13 b.33.1.1 139813 3bm4A 210 24.22 1uliA 460 24.27 b.33.1.2,d.129.3.3 107921,107922 1ss3A 50 24.84 g.2.3.1 105975 1v8yA 170 24.97 d.113.1.1 113581 2rfkB 53 25.31 2vqeR 88 26.83 1o8rA 94 28.53 d.234.1.1 86677 2a8nA 144 28.70 c.97.1.2 126408 1s72Z 73 29.12 g.41.8.1 105345 2jo6A 113 29.56 2i7fA 108 29.78 2de6D 115 29.85 2e4qA 109 30.26 2vrwB 406 30.59 2ivfA 976 31.26 2j015 60 32.10 1sjgA 112 32.27 b.33.1.1 105647 1p6oA 161 33.54 c.97.1.2 94185 2i7rA 118 33.91 d.32.1.2 137102 1ma3A 253 35.21 c.31.1.5 78883 1wwrA 171 35.91 c.97.1.2 121366 2uubR 88 35.93 a.4.8.1 139949 1vm9A 111 36.72 b.33.1.1 108886 2v3vA 723 37.74 2di0A 71 37.98 a.5.2.4 131521 2orwA 184 41.35 2fmlA 273 41.83 a.4.5.68,d.113.1.6 133778,133779 6rxnA 45 41.91 g.41.5.1 45222 1ayoA 130 41.92 b.2.4.1 22431 2hf1A 68 42.44 1cl4A 60 42.75 g.40.1.1 45171 2ibtA 421 43.38 c.66.1.27,d.287.1.1 137205,137206 3cngA 189 45.06 1fqtA 112 45.63 b.33.1.1 24441 1dat 174 45.75 2yvpA 182 47.53 3c7bA 417 51.26 2bt6A 108 52.14 d.15.4.1 129152 1lv3A 68 52.20 g.39.1.9 78231 1l3yA 41 53.20 g.3.11.6 73558 1xakA 83 53.39 b.1.24.1 115037 3bk3C 67 54.65 1v54F 98 54.88 g.41.5.3 100327 1gz2A 142 55.45 d.169.1.1 83392 2za8A 167 57.14 2p02A 396 58.79 2fa8A 105 59.53 c.47.1.23 133185 1yk4A 52 59.65 1nscA 390 60.55 b.68.1.1 27591 1r7sA 106 63.66 d.15.4.1 97207 2vpzA 765 64.00 2uvlA 96 64.59 2occF 98 64.73 g.41.5.3 45256 1gl4A 285 64.77 d.22.1.2,g.3.11.5 65286,65287 2riqA 160 65.92 1h0hA 977 66.39 b.52.2.2,c.81.1.1 76435,76436 1rb9A 52 66.85 g.41.5.1 45214 2pveA 54 67.05 2d8qA 70 67.46 g.85.1.1 131335 3bwwA 307 69.22 2b5hA 200 69.66 b.82.1.19 127894 1qxfA 66 70.91 g.41.8.4 96527 2napA 723 71.44 b.52.2.2,c.81.1.1 26926,35334 2b06A 155 72.41 d.113.1.1 127624 2oap1 511 72.82 1iroA 54 73.61 g.41.5.1 45223 2vm5A 106 75.24 2i5oA 39 76.45 3c0dA 119 76.50 2jz8A 87 77.13 1b13A 54 78.49 g.41.5.1 45227 1gp0A 143 80.69 b.64.1.1 70300 2poiA 94 86.94 1ro5A 201 87.38 d.108.1.3 105023 1mmcA 30 87.40 g.3.1.2 44061 2iwgB 181 87.93 1m2kA 249 88.47 c.31.1.5 84754 1v47A 349 88.59 b.122.1.3,c.26.1.5 100292,100293