# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.09823 g.44.1.4 130791 1vk6A 269 0.1567 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.3375 g.41.16.1 127135 1q33A 292 0.4312 d.113.1.1 95657 2ausB 60 0.4559 2bmoA 447 1.189 b.33.1.2,d.129.3.3 128804,128805 2e72A 49 1.267 1z02A 446 1.485 2gbwA 454 1.491 2de6A 392 1.566 b.33.1.2,d.129.3.3 131415,131416 2b1xA 470 1.645 b.33.1.2,d.129.3.3 127675,127676 2ckfA 454 1.821 1rlyA 60 2.268 g.41.3.1 104988 1dl6A 58 2.821 g.41.3.1 45207 1ptqA 50 4.080 g.49.1.1 45349 1ptq 50 5.198 1ltlA 279 5.303 b.40.4.11 84701 1tiyA 164 5.612 c.97.1.2 107012 1jj2Y 73 5.760 g.41.8.1 63110 1uliA 460 7.016 b.33.1.2,d.129.3.3 107921,107922 2qkmB 266 8.185 2qtdA 105 8.201 1o7nA 449 8.208 b.33.1.2,d.129.3.3 81162,81163 1qxfA 66 8.269 g.41.8.4 96527 2e4qA 109 8.392 1eg9A 449 8.436 b.33.1.2,d.129.3.3 24443,41322 1n0zA 45 8.877 g.41.11.1 85247 1v8yA 170 9.208 d.113.1.1 113581 1x6mA 196 9.769 b.88.1.4 114920 1a7iA 81 10.15 g.39.1.3,g.39.1.3 45143,45144 2i7fA 108 10.67 1wkqA 164 10.69 c.97.1.2 109393 1jd5A 124 10.82 g.52.1.1 66544 1s72Z 73 12.05 g.41.8.1 105345 1ma3A 253 12.11 c.31.1.5 78883 2qjtA 352 12.75 3bm4A 210 12.89 2nx8A 179 13.04 1rfs 139 13.30 2ibtA 421 14.15 c.66.1.27,d.287.1.1 137205,137206 1ss3A 50 15.15 g.2.3.1 105975 2rfkB 53 15.67 1v54F 98 15.83 g.41.5.3 100327 1fqtA 112 16.09 b.33.1.1 24441 2vqeR 88 16.16 1eu1A 780 16.27 b.52.2.2,c.81.1.1 26903,35311 1nscA 390 16.87 b.68.1.1 27591 2uubR 88 17.38 a.4.8.1 139949 6rxnA 45 17.94 g.41.5.1 45222 2vrwB 406 18.35 2di0A 71 18.60 a.5.2.4 131521 2yvpA 182 19.85 2fmlA 273 20.77 a.4.5.68,d.113.1.6 133778,133779 1pq7A 224 20.96 b.47.1.2 95002 1try 224 20.99 2occF 98 21.33 g.41.5.3 45256 1yk4A 52 21.91 2hf1A 68 22.08 1fn8A 224 22.10 b.47.1.2 26012 2a8nA 144 23.08 c.97.1.2 126408 2pveA 54 23.68 3cngA 189 24.17 1o8rA 94 25.05 d.234.1.1 86677 1rb9A 52 25.48 g.41.5.1 45214 1iroA 54 25.50 g.41.5.1 45223 1f37A 110 25.71 c.47.1.11 33088 1b13A 54 27.51 g.41.5.1 45227 1dat 174 27.61 1twfL 70 27.78 g.41.9.2 112737 1wwrA 171 28.08 c.97.1.2 121366 1ayoA 130 28.23 b.2.4.1 22431 1p6oA 161 29.01 c.97.1.2 94185 2q3wA 111 29.80 b.33.1.1 139813 1gz2A 142 30.05 d.169.1.1 83392 2j015 60 30.27 2ivfA 976 30.83 1cl4A 60 31.36 g.40.1.1 45171 2riqA 160 31.99 2fa8A 105 32.22 c.47.1.23 133185 1r7sA 106 32.33 d.15.4.1 97207 1lv3A 68 32.84 g.39.1.9 78231 2d8qA 70 32.97 g.85.1.1 131335 1xakA 83 33.95 b.1.24.1 115037 2ih2A 421 34.06 2b5hA 200 34.12 b.82.1.19 127894 2v3vA 723 34.19 2za8A 167 34.42 2de6D 115 34.67 2conA 79 34.89 g.41.15.1 130680 1m2kA 249 34.92 c.31.1.5 84754 2i5oA 39 34.92 2pvxA 54 35.06 2orwA 184 35.66 1sjgA 112 35.73 b.33.1.1 105647 1ro5A 201 37.57 d.108.1.3 105023 1vm9A 111 37.91 b.33.1.1 108886 2jo6A 113 38.10 2bt6A 108 38.80 d.15.4.1 129152 1s5aA 150 41.00 d.17.4.10 98525 3bwwA 307 41.44 2napA 723 42.36 b.52.2.2,c.81.1.1 26926,35334 3bk3C 67 42.42 1g8kA 825 42.82 b.52.2.2,c.81.1.1 26920,35328 1rb9 53 43.38 1jocA 125 43.49 g.50.1.1,h.1.21.1 66990,66991 2aenA 164 48.34 1brfA 53 48.92 g.41.5.1 45236 1h0hA 977 49.92 b.52.2.2,c.81.1.1 76435,76436 1l3yA 41 52.50 g.3.11.6 73558 2vpzA 765 53.15 2bv2A 83 53.87 2uvlA 96 53.90 1vqoZ 83 54.50 g.41.8.1 120387 2a4nA 182 55.30 d.108.1.1 126159 2i2lA 142 55.83 2i7rA 118 59.30 d.32.1.2 137102 2b06A 155 59.60 d.113.1.1 127624 2vm5A 106 59.81 1x3zA 335 60.34 d.3.1.4 121673 2jz8A 87 61.41 2qkdA 404 63.20 1j8eA 44 63.69 g.12.1.1 66437 2ejbA 189 64.83 1x0tA 120 65.27 2e7zA 727 65.91 2poiA 94 66.00 1wba 175 66.11 1mzbA 136 67.20 a.4.5.42 91497 2g84A 197 67.38 c.97.1.2 134766 1v47A 349 67.43 b.122.1.3,c.26.1.5 100292,100293 1fleI 57 69.21 g.3.14.1 44352 2jroA 78 69.38 3c0dA 119 69.65 2fha 183 69.74 2fkiA 126 69.76 d.198.3.1 133657 2gnrA 145 69.89 2p02A 396 70.67 1dvpA 220 72.09 a.118.9.2,g.50.1.1 19216,45358 1hdlA 55 73.40 g.68.1.2 65808 2bngA 149 74.74 2cttA 104 74.79 1mmcA 30 75.21 g.3.1.2 44061 2oap1 511 76.01 2eppA 66 76.81 1se0A 116 77.23 g.52.1.1 98814 2r0lB 35 77.25 2g45A 129 77.37 3bidA 64 77.69 2baiA 32 77.84 g.87.1.1 128237 1gl4A 285 78.06 d.22.1.2,g.3.11.5 65286,65287 2b3jA 159 78.59 c.97.1.2 127787 2iv2X 715 78.95 b.52.2.2,c.81.1.1 137714,137715 1vqo1 57 79.58 1l1dA 152 79.71 b.88.1.3 73452 1e6eB 128 79.84 d.15.4.1 59300 1z3aA 168 80.01 c.97.1.2 124396 3c7bA 417 80.89 1bq9A 54 80.95 g.41.5.1 45238 1jy2P 48 81.52 h.1.8.1 67442 3d9tA 97 82.19 2qtzA 539 82.23 1xpaA 122 82.37 a.6.1.2,g.39.1.5 16308,45151 1tuhA 156 82.50 d.17.4.11 107345 1lb3A 182 82.60 a.25.1.1 77873 1ul4A 94 82.63 g.72.1.1 99538 2vl6A 268 83.05 1xlqA 106 84.97 d.15.4.1 122119 2dsxA 52 86.48 g.41.5.1 131699 2bx9A 53 87.14 1uwmA 106 87.24 d.15.4.1 119763 1dmmA 131 87.64 d.17.4.3 38114 2yqpA 60 87.87 1gp0A 143 89.11 b.64.1.1 70300