# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ct7A 86 0.09190 g.44.1.4 130791 1vk6A 269 0.1920 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2apoB 60 0.2616 g.41.16.1 127135 1q33A 292 0.3229 d.113.1.1 95657 2ausB 60 0.4164 2e72A 49 0.7582 2de6A 392 1.421 b.33.1.2,d.129.3.3 131415,131416 2bmoA 447 1.488 b.33.1.2,d.129.3.3 128804,128805 1rlyA 60 1.795 g.41.3.1 104988 1z02A 446 1.922 2b1xA 470 1.945 b.33.1.2,d.129.3.3 127675,127676 2ckfA 454 2.008 2gbwA 454 2.204 1dl6A 58 2.358 g.41.3.1 45207 2qtdA 105 2.601 1ltlA 279 4.348 b.40.4.11 84701 2qkmB 266 5.281 1jj2Y 73 6.145 g.41.8.1 63110 2vqeR 88 7.107 1eu1A 780 7.444 b.52.2.2,c.81.1.1 26903,35311 2i7fA 108 7.608 1jd5A 124 7.666 g.52.1.1 66544 1tiyA 164 7.963 c.97.1.2 107012 1ptqA 50 8.147 g.49.1.1 45349 1g8kA 825 8.540 b.52.2.2,c.81.1.1 26920,35328 2uubR 88 9.638 a.4.8.1 139949 1n0zA 45 9.95 g.41.11.1 85247 1v8yA 170 10.09 d.113.1.1 113581 2e4qA 109 10.85 2de6D 115 10.94 3bm4A 210 11.11 1pq7A 224 11.17 b.47.1.2 95002 2qjtA 352 11.27 1nscA 390 11.31 b.68.1.1 27591 1ptq 50 11.34 1f37A 110 11.47 c.47.1.11 33088 1fn8A 224 11.84 b.47.1.2 26012 1o7nA 449 11.86 b.33.1.2,d.129.3.3 81162,81163 1uliA 460 12.38 b.33.1.2,d.129.3.3 107921,107922 1try 224 12.61 1eg9A 449 12.64 b.33.1.2,d.129.3.3 24443,41322 1twfL 70 12.91 g.41.9.2 112737 1rfs 139 12.93 1a7iA 81 13.06 g.39.1.3,g.39.1.3 45143,45144 1ma3A 253 13.20 c.31.1.5 78883 1x6mA 196 13.40 b.88.1.4 114920 2jo6A 113 13.70 1ayoA 130 14.12 b.2.4.1 22431 1fqtA 112 14.30 b.33.1.1 24441 1wkqA 164 14.74 c.97.1.2 109393 2nx8A 179 14.87 2ivfA 976 15.31 2q3wA 111 15.32 b.33.1.1 139813 1ss3A 50 16.10 g.2.3.1 105975 1s72Z 73 16.91 g.41.8.1 105345 2rfkB 53 18.53 1cl4A 60 18.56 g.40.1.1 45171 1wwrA 171 18.89 c.97.1.2 121366 3bk3C 67 18.90 1lv3A 68 19.85 g.39.1.9 78231 2vrwB 406 20.34 6rxnA 45 20.44 g.41.5.1 45222 2di0A 71 20.58 a.5.2.4 131521 2v3vA 723 20.95 2j015 60 20.95 3cngA 189 21.04 1vm9A 111 21.65 b.33.1.1 108886 2b5hA 200 21.67 b.82.1.19 127894 2fmlA 273 21.80 a.4.5.68,d.113.1.6 133778,133779 2a8nA 144 21.83 c.97.1.2 126408 2ibtA 421 22.46 c.66.1.27,d.287.1.1 137205,137206 1qxfA 66 22.75 g.41.8.4 96527 2yvpA 182 22.93 1sjgA 112 22.94 b.33.1.1 105647 1s5aA 150 23.67 d.17.4.10 98525 1ro5A 201 25.04 d.108.1.3 105023 1xakA 83 25.17 b.1.24.1 115037 2i7rA 118 25.26 d.32.1.2 137102 1yk4A 52 26.01 2napA 723 26.37 b.52.2.2,c.81.1.1 26926,35334 2fa8A 105 26.96 c.47.1.23 133185 1v54F 98 27.37 g.41.5.3 100327 2orwA 184 28.03 1l3yA 41 28.23 g.3.11.6 73558 2hf1A 68 29.55 1o8rA 94 30.25 d.234.1.1 86677 1iroA 54 31.41 g.41.5.1 45223 2occF 98 31.45 g.41.5.3 45256 2pveA 54 31.50 1p6oA 161 31.98 c.97.1.2 94185 2bt6A 108 32.17 d.15.4.1 129152 1rb9A 52 32.20 g.41.5.1 45214 1dat 174 32.94 2vpzA 765 33.48 1b13A 54 34.13 g.41.5.1 45227 1r7sA 106 34.19 d.15.4.1 97207 1h0hA 977 34.35 b.52.2.2,c.81.1.1 76435,76436 1gp0A 143 34.55 b.64.1.1 70300 2fkiA 126 36.13 d.198.3.1 133657 2oap1 511 36.19 2jroA 78 36.89 2riqA 160 36.95 2d8qA 70 38.92 g.85.1.1 131335 2pvxA 54 39.16 2iv2X 715 41.32 b.52.2.2,c.81.1.1 137714,137715 2b06A 155 41.32 d.113.1.1 127624 2za8A 167 42.47 2i5oA 39 43.02 2uvlA 96 43.69 1hdlA 55 45.68 g.68.1.2 65808 2jz8A 87 45.87 2vm5A 106 46.09 2pmzP 48 46.12 3c0dA 119 47.96 2poiA 94 49.85 3c7bA 417 50.00 1pl8A 356 50.11 b.35.1.2,c.2.1.1 94878,94879 2e7zA 727 50.23 2conA 79 50.43 g.41.15.1 130680 1rb9 53 50.81 2bv2A 83 51.29 2ck3G 272 51.30 c.49.2.1 130562 3bwwA 307 51.47 1gz2A 142 52.59 d.169.1.1 83392 2d13A 227 53.36 c.26.2.1 131121 2i2lA 142 53.79 1m2kA 249 54.02 c.31.1.5 84754 2a4nA 182 54.09 d.108.1.1 126159 1tuhA 156 54.56 d.17.4.11 107345 2cttA 104 55.58 2j01V 101 55.58 2bngA 149 55.80 2b5lC 222 58.65 1brfA 53 58.98 g.41.5.1 45236 2bs6A 90 59.99 2g45A 129 60.78 1kzfA 230 61.81 d.108.1.3 73354 2p02A 396 62.19 2jdiG 273 62.62 c.49.2.1 138272 1v47A 349 62.84 b.122.1.3,c.26.1.5 100292,100293 1zatA 250 63.42 b.160.1.1,d.335.1.1 124845,124846 1e3jA 352 63.77 b.35.1.2,c.2.1.1 24765,29781 3d9tA 97 64.99 1mmcA 30 65.03 g.3.1.2 44061 2ih2A 421 67.93 2aenA 164 68.61 1fleI 57 69.01 g.3.14.1 44352 2g84A 197 69.59 c.97.1.2 134766 1l2tA 235 69.84 c.37.1.12 73514 1zccA 248 70.19 c.1.18.3 124903 1dmmA 131 70.67 d.17.4.3 38114 1e6eB 128 72.13 d.15.4.1 59300 1kqfA 1015 73.35 b.52.2.2,c.81.1.1 72871,72872 2j2sA 72 75.65 1m2dA 110 76.80 c.47.1.11 78476 1mzbA 136 76.88 a.4.5.42 91497 2bx9A 53 77.24 2iwgB 181 77.27 2baiA 32 77.44 g.87.1.1 128237 1gl4A 285 77.51 d.22.1.2,g.3.11.5 65286,65287 3bidA 64 77.97 1x3zA 335 79.76 d.3.1.4 121673 1vqoZ 83 79.81 g.41.8.1 120387 1w70A 60 80.63 2gqrA 237 80.73 2fha 183 81.89 1j8eA 44 82.87 g.12.1.1 66437 2a15A 139 82.92 d.17.4.3 125973 1z3aA 168 83.02 c.97.1.2 124396 1se0A 116 83.32 g.52.1.1 98814 1wo3A 25 83.51 1wba 175 83.63 1jvbA 347 83.66 b.35.1.2,c.2.1.1 77181,77182 1rtuA 114 83.79 d.1.1.4 36139 1r4yA 136 84.31 d.1.1.3 97056 1utyA 187 84.60 b.147.1.1 108036 1ul4A 94 84.76 g.72.1.1 99538 1lluA 342 85.07 b.35.1.2,c.2.1.1 91064,91065 2geyA 158 85.35 2anpA 291 86.81 c.56.5.4 127056 1nwwA 149 86.95 d.17.4.8 86306 2qtzA 539 86.98 1vhrA 184 87.34 c.45.1.1 32651 1jocA 125 87.50 g.50.1.1,h.1.21.1 66990,66991 1nykA 165 87.54 b.33.1.1 86408 2b3jA 159 87.86 c.97.1.2 127787 2vl6A 268 89.32