# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vk6A	269	1.055	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
1q33A	292	3.633	d.113.1.1	95657
2ct7A	86	3.705	g.44.1.4	130791
2apoB	60	4.460	g.41.16.1	127135
2ausB	60	5.197		
1f37A	110	8.913	c.47.1.11	33088
3bm4A	210	14.12		
1g8kA	825	15.02	b.52.2.2,c.81.1.1	26920,35328
1ma3A	253	18.38	c.31.1.5	78883
2e72A	49	19.48		
1eu1A	780	19.52	b.52.2.2,c.81.1.1	26903,35311
1rlyA	60	19.55	g.41.3.1	104988
1dl6A	58	21.77	g.41.3.1	45207
1zccA	248	22.78	c.1.18.3	124903
1jd5A	124	23.88	g.52.1.1	66544
1m2dA	110	24.37	c.47.1.11	78476
2di0A	71	24.45	a.5.2.4	131521
1x6mA	196	27.83	b.88.1.4	114920
1jj2Y	73	34.11	g.41.8.1	63110
1n0zA	45	35.22	g.41.11.1	85247
1r4yA	136	35.78	d.1.1.3	97056
2pz0A	252	42.59		
1s72Z	73	52.83	g.41.8.1	105345
1aqzA	149	54.05	d.1.1.3	36238
2glzA	153	54.30	d.81.3.1	135348
2qjtA	352	56.34		
1rtuA	114	57.26	d.1.1.4	36139
1o8rA	94	60.41	d.234.1.1	86677
1twfB	1224	68.03	e.29.1.1	112726
1utyA	187	68.32	b.147.1.1	108036
1v54F	98	68.99	g.41.5.3	100327
3ch0A	272	70.30		
2bt6A	108	71.17	d.15.4.1	129152
1mfwA	107	75.31	d.15.11.1	84940
2occF	98	77.83	g.41.5.3	45256
1ltlA	279	79.22	b.40.4.11	84701
1w25A	459	85.50	c.23.1.1,c.23.1.1,d.58.29.2	114090,114091,114092
3c7bA	417	85.58		
2csvA	72	85.91		
3c0fB	91	87.76		
1ayoA	130	88.41	b.2.4.1	22431
1iycA	36	89.67	g.31.1.2	83782