# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f7fA 494 4.884 c.1.17.1,d.41.2.1 133088,133089 2ra2A 64 8.100 1uctA 218 8.720 b.1.1.4,b.1.1.4 88467,88468 1erjA 393 8.735 b.69.4.1 27660 2avuE 192 9.591 2bmoA 447 9.95 b.33.1.2,d.129.3.3 128804,128805 1nm1G 125 10.87 d.109.1.1 80653 3bduA 62 11.09 2ifsA 169 13.72 1jw9B 249 18.41 c.111.1.1 67377 2aj6A 159 19.88 d.108.1.1 126841 1pl8A 356 20.28 b.35.1.2,c.2.1.1 94878,94879 1crzA 403 21.95 b.68.4.1,c.51.2.1 27629,33211 1xa0A 328 22.07 b.35.1.2,c.2.1.1 115021,115022 1eg9A 449 25.50 b.33.1.2,d.129.3.3 24443,41322 1nu5A 370 26.40 c.1.11.2,d.54.1.1 92183,92184 2cf5A 357 27.34 2hcyA 347 28.99 1xtaA 221 29.40 1y9aA 360 29.60 1lluA 342 32.72 b.35.1.2,c.2.1.1 91064,91065 2ausB 60 33.16 1o7nA 449 34.57 b.33.1.2,d.129.3.3 81162,81163 1z02A 446 34.60 1vavA 222 36.15 b.29.1.18 108472 1unnC 115 36.58 d.240.1.1 99680 2giyA 191 36.72 b.1.1.1 135254 2gnqA 336 37.46 1zud1 251 38.00 3bk3C 67 38.21 2bcjB 340 40.42 b.69.4.1 128289 1j8eA 44 41.21 g.12.1.1 66437 1ygeA 839 41.28 a.119.1.1,b.12.1.1 19234,23634 1jb0D 138 42.91 d.187.1.1 62823 1oeyJ 107 44.17 d.15.2.2 92804 1d4xG 126 45.00 d.109.1.1 59109 1gxrA 337 46.18 b.69.4.1 70722 2ouiA 360 48.17 1zsyA 357 49.00 2izrA 330 49.96 2vgpA 284 50.98 1x89A 178 51.55 b.60.1.1 121799 1ca1 370 52.29 1g72A 573 53.35 b.70.1.1 27680 3brkX 420 53.58 1r4yA 136 53.99 d.1.1.3 97056 2fp8A 322 54.65 1rovA 857 54.72 a.119.1.1,b.12.1.1 97674,97675 2vcyA 344 55.38 1e3jA 352 55.46 b.35.1.2,c.2.1.1 24765,29781 1uliA 460 56.45 b.33.1.2,d.129.3.3 107921,107922 1oqkA 97 57.29 b.137.1.1 93419 1aqzA 149 57.36 d.1.1.3 36238 1k8kB 394 58.88 c.55.1.1 68307 2bbkH 355 59.05 b.69.2.1 27634 1tzaA 134 59.85 b.1.23.1 107468 1zxtA 76 60.15 1rc9A 221 61.23 d.111.1.1,g.19.1.2 111765,111766 1ca1A 370 61.29 a.124.1.1,b.12.1.3 19340,23648 2v72A 143 62.10 2okvA 209 63.42 2b1xA 470 63.87 b.33.1.2,d.129.3.3 127675,127676 2pbiB 354 63.96 3c5mA 396 64.19 1u58A 253 64.43 2dm6A 333 64.53 b.35.1.2,c.2.1.1 131567,131568 1m2kA 249 65.07 c.31.1.5 84754 1qx4A 274 65.51 b.43.4.2,c.25.1.1 104624,104625 2madH 373 65.53 b.69.2.1 27639 2jz8A 87 66.68 2h14A 317 66.90 2q5bA 105 68.26 1z3qA 200 68.72 2apoB 60 71.89 g.41.16.1 127135 1yge 839 72.62 2q8oA 136 75.94 2q22A 139 76.24 1k32A 1045 77.39 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1gtmA 419 78.34 c.2.1.7,c.58.1.1 30223,33871 1okiA 210 78.70 b.11.1.1,b.11.1.1 93255,93256 2ovrB 445 79.08 1zoiA 276 79.56 2gqtA 268 80.55 1jqbA 351 80.59 b.35.1.2,c.2.1.1 77151,77152 1nexB 464 82.35 a.158.1.1,b.69.4.1 80443,80444 2frgP 106 82.51 1ltsA 185 84.43 d.166.1.1 42229 3c8uA 208 85.15 1zvnA 99 87.26 1zgkA 308 87.47 1ug1A 92 88.86 b.34.2.1 99360