PFRMAT RR TARGET T0480 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MQKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKA KKSKS 4 13 0 8 0.438659 4 14 0 8 0.774122 4 15 0 8 0.800022 4 16 0 8 0.957469 4 17 0 8 0.979819 4 18 0 8 0.961044 4 19 0 8 0.8301 4 20 0 8 0.854644 4 21 0 8 0.870961 4 22 0 8 0.57297 4 23 0 8 0.603853 4 24 0 8 0.614001 4 25 0 8 0.518457 4 26 0 8 0.625195 4 27 0 8 0.79468 4 28 0 8 0.75205 4 29 0 8 0.780285 4 30 0 8 0.83717 4 31 0 8 0.805321 4 32 0 8 0.751517 4 33 0 8 0.752167 4 34 0 8 0.510438 4 36 0 8 0.477942 4 37 0 8 0.5371 4 38 0 8 0.469617 4 39 0 8 0.551335 4 40 0 8 0.489067 4 41 0 8 0.446334 4 42 0 8 0.551968 4 43 0 8 0.539475 4 44 0 8 0.586746 4 45 0 8 0.666849 4 46 0 8 0.564695 4 47 0 8 0.876221 4 48 0 8 0.761111 4 49 0 8 0.620209 4 50 0 8 0.61113 4 51 0 8 0.50249 4 52 0 8 0.510795 5 14 0 8 0.56648 5 15 0 8 0.642991 5 16 0 8 0.949323 5 17 0 8 0.969849 5 18 0 8 0.943087 5 19 0 8 0.797676 5 20 0 8 0.791304 5 21 0 8 0.767658 5 22 0 8 0.467229 5 23 0 8 0.464727 5 24 0 8 0.427821 5 25 0 8 0.420262 5 26 0 8 0.524291 5 27 0 8 0.674894 5 28 0 8 0.569219 5 29 0 8 0.560601 5 30 0 8 0.58767 5 31 0 8 0.568191 5 32 0 8 0.605123 5 33 0 8 0.618107 5 34 0 8 0.353868 5 36 0 8 0.380533 5 37 0 8 0.442582 5 39 0 8 0.422549 5 40 0 8 0.376042 5 42 0 8 0.420101 5 43 0 8 0.441464 5 44 0 8 0.483142 5 45 0 8 0.538124 5 46 0 8 0.457704 5 47 0 8 0.743551 5 48 0 8 0.621972 5 49 0 8 0.465502 5 50 0 8 0.430914 6 15 0 8 0.79053 6 16 0 8 0.986347 6 17 0 8 0.993532 6 18 0 8 0.977617 6 19 0 8 0.861461 6 20 0 8 0.873251 6 21 0 8 0.938015 6 22 0 8 0.481984 6 23 0 8 0.558707 6 24 0 8 0.682717 6 25 0 8 0.50659 6 26 0 8 0.734731 6 27 0 8 0.867334 6 28 0 8 0.886612 6 29 0 8 0.912062 6 30 0 8 0.925141 6 31 0 8 0.813528 6 32 0 8 0.651889 6 33 0 8 0.777591 6 34 0 8 0.462921 6 36 0 8 0.498826 6 37 0 8 0.600742 6 38 0 8 0.581613 6 39 0 8 0.777449 6 40 0 8 0.473442 6 41 0 8 0.568238 6 42 0 8 0.730329 6 43 0 8 0.63123 6 44 0 8 0.781675 6 45 0 8 0.744739 6 46 0 8 0.64486 6 47 0 8 0.919773 6 48 0 8 0.760557 6 49 0 8 0.559677 6 50 0 8 0.492555 6 51 0 8 0.382671 6 52 0 8 0.432725 7 16 0 8 0.985106 7 17 0 8 0.99252 7 18 0 8 0.979402 7 19 0 8 0.840425 7 20 0 8 0.825848 7 21 0 8 0.917966 7 22 0 8 0.51803 7 23 0 8 0.540016 7 24 0 8 0.74288 7 25 0 8 0.594426 7 26 0 8 0.769464 7 27 0 8 0.883635 7 28 0 8 0.903326 7 29 0 8 0.918251 7 30 0 8 0.9262 7 31 0 8 0.833788 7 32 0 8 0.650903 7 33 0 8 0.74468 7 34 0 8 0.404117 7 36 0 8 0.514089 7 37 0 8 0.610726 7 38 0 8 0.572313 7 39 0 8 0.725829 7 40 0 8 0.530677 7 41 0 8 0.509116 7 42 0 8 0.685192 7 43 0 8 0.64221 7 44 0 8 0.727541 7 45 0 8 0.690305 7 46 0 8 0.555343 7 47 0 8 0.857714 7 48 0 8 0.643195 7 49 0 8 0.444042 7 50 0 8 0.377109 8 17 0 8 0.861682 8 18 0 8 0.691096 8 19 0 8 0.392315 8 20 0 8 0.3559 8 21 0 8 0.452496 8 26 0 8 0.434735 8 27 0 8 0.452707 8 44 0 8 0.381234 9 18 0 8 0.626046 9 20 0 8 0.399075 9 21 0 8 0.525593 9 24 0 8 0.360944 9 26 0 8 0.484318 9 27 0 8 0.568374 9 28 0 8 0.55941 9 29 0 8 0.538594 9 30 0 8 0.477383 9 39 0 8 0.397726 9 42 0 8 0.383861 9 43 0 8 0.361485 9 44 0 8 0.519048 9 45 0 8 0.439362 9 47 0 8 0.544104 10 26 0 8 0.390005 12 21 0 8 0.445982 12 33 0 8 0.374562 13 26 0 8 0.356797 13 27 0 8 0.363818 13 33 0 8 0.405215 14 23 0 8 0.519007 14 24 0 8 0.742284 14 25 0 8 0.532219 14 26 0 8 0.636566 14 27 0 8 0.78068 14 28 0 8 0.831006 14 29 0 8 0.843365 14 30 0 8 0.851459 14 31 0 8 0.76572 14 32 0 8 0.496255 14 33 0 8 0.666162 14 36 0 8 0.371043 14 37 0 8 0.52488 14 38 0 8 0.510135 14 39 0 8 0.609384 14 40 0 8 0.4163 14 41 0 8 0.400551 14 42 0 8 0.447804 14 43 0 8 0.399995 14 44 0 8 0.571139 14 45 0 8 0.375047 14 47 0 8 0.74223 14 48 0 8 0.514797 15 24 0 8 0.438609 15 25 0 8 0.362699 15 26 0 8 0.469253 15 27 0 8 0.566584 15 28 0 8 0.498598 15 29 0 8 0.48215 15 30 0 8 0.434142 15 31 0 8 0.394258 15 33 0 8 0.381546 15 47 0 8 0.427853 16 25 0 8 0.458117 16 26 0 8 0.630128 16 27 0 8 0.675147 16 28 0 8 0.578197 16 29 0 8 0.543479 16 30 0 8 0.496048 16 31 0 8 0.398663 16 33 0 8 0.476094 16 37 0 8 0.459121 16 38 0 8 0.362935 16 39 0 8 0.469893 16 40 0 8 0.370826 16 42 0 8 0.376819 16 43 0 8 0.454705 16 44 0 8 0.475346 16 45 0 8 0.427795 16 47 0 8 0.476161 17 26 0 8 0.676091 17 27 0 8 0.796637 17 28 0 8 0.753664 17 29 0 8 0.736038 17 30 0 8 0.702449 17 31 0 8 0.52371 17 32 0 8 0.39132 17 33 0 8 0.549265 17 36 0 8 0.357524 17 37 0 8 0.495212 17 38 0 8 0.448204 17 39 0 8 0.58122 17 40 0 8 0.377552 17 41 0 8 0.380558 17 42 0 8 0.542703 17 43 0 8 0.501752 17 44 0 8 0.607069 17 45 0 8 0.548926 17 46 0 8 0.398873 17 47 0 8 0.63924 17 48 0 8 0.388711 18 27 0 8 0.920041 18 28 0 8 0.871496 18 29 0 8 0.819237 18 30 0 8 0.812481 18 31 0 8 0.733915 18 32 0 8 0.714377 18 33 0 8 0.79834 18 34 0 8 0.52468 18 35 0 8 0.426334 18 36 0 8 0.628068 18 37 0 8 0.742955 18 38 0 8 0.616438 18 39 0 8 0.786466 18 40 0 8 0.636828 18 41 0 8 0.58066 18 42 0 8 0.717866 18 43 0 8 0.75818 18 44 0 8 0.713459 18 45 0 8 0.700311 18 46 0 8 0.545905 18 47 0 8 0.620535 18 48 0 8 0.4388 19 28 0 8 0.743187 19 29 0 8 0.663736 19 30 0 8 0.639603 19 31 0 8 0.563501 19 32 0 8 0.621494 19 33 0 8 0.75445 19 34 0 8 0.500989 19 35 0 8 0.419526 19 36 0 8 0.585756 19 37 0 8 0.704296 19 38 0 8 0.581894 19 39 0 8 0.743694 19 40 0 8 0.546123 19 41 0 8 0.539046 19 42 0 8 0.657983 19 43 0 8 0.673878 19 44 0 8 0.624471 19 45 0 8 0.620054 19 46 0 8 0.442212 19 47 0 8 0.50908 20 29 0 8 0.561585 20 30 0 8 0.526 20 31 0 8 0.469394 20 32 0 8 0.483724 20 33 0 8 0.609964 20 34 0 8 0.42207 20 36 0 8 0.489037 20 37 0 8 0.634425 20 38 0 8 0.561707 20 39 0 8 0.625856 20 40 0 8 0.464332 20 41 0 8 0.507863 20 42 0 8 0.610586 20 43 0 8 0.523942 20 44 0 8 0.542468 20 45 0 8 0.596517 20 46 0 8 0.426866 20 47 0 8 0.50451 20 48 0 8 0.380127 21 30 0 8 0.904161 21 31 0 8 0.782111 21 32 0 8 0.759419 21 33 0 8 0.862683 21 34 0 8 0.609212 21 35 0 8 0.519707 21 36 0 8 0.699281 21 37 0 8 0.822388 21 38 0 8 0.780151 21 39 0 8 0.877459 21 40 0 8 0.6607 21 41 0 8 0.721095 21 42 0 8 0.840229 21 43 0 8 0.758558 21 44 0 8 0.773834 21 45 0 8 0.741945 21 46 0 8 0.533169 21 47 0 8 0.617033 21 48 0 8 0.402894 22 31 0 8 0.560614 22 32 0 8 0.615271 22 33 0 8 0.720249 22 34 0 8 0.507533 22 35 0 8 0.463906 22 36 0 8 0.587049 22 37 0 8 0.747841 22 38 0 8 0.621621 22 39 0 8 0.748741 22 40 0 8 0.549057 22 41 0 8 0.556903 22 42 0 8 0.57033 22 43 0 8 0.531252 22 44 0 8 0.505804 22 45 0 8 0.450436 23 32 0 8 0.580797 23 33 0 8 0.673565 23 34 0 8 0.480415 23 35 0 8 0.47458 23 36 0 8 0.582263 23 37 0 8 0.719006 23 38 0 8 0.677862 23 39 0 8 0.706105 23 40 0 8 0.540089 23 41 0 8 0.629673 23 42 0 8 0.642194 23 43 0 8 0.520998 23 44 0 8 0.503354 23 45 0 8 0.481471 24 33 0 8 0.791844 24 34 0 8 0.553747 24 35 0 8 0.522853 24 36 0 8 0.637481 24 37 0 8 0.77811 24 38 0 8 0.758528 24 39 0 8 0.796688 24 40 0 8 0.556843 24 41 0 8 0.701029 24 42 0 8 0.753973 24 43 0 8 0.589621 24 44 0 8 0.633654 24 45 0 8 0.597476 24 46 0 8 0.395461 24 47 0 8 0.520203 24 48 0 8 0.376111 25 34 0 8 0.574349 25 35 0 8 0.540036 25 36 0 8 0.626271 25 37 0 8 0.742077 25 38 0 8 0.729819 25 39 0 8 0.701144 25 40 0 8 0.556741 25 41 0 8 0.664675 25 42 0 8 0.698748 25 43 0 8 0.562578 25 44 0 8 0.546804 25 45 0 8 0.561764 25 46 0 8 0.436516 25 47 0 8 0.54214 25 48 0 8 0.4861 25 49 0 8 0.440713 25 50 0 8 0.423577 25 51 0 8 0.362412 25 52 0 8 0.359088 26 35 0 8 0.540277 26 36 0 8 0.603559 26 37 0 8 0.701602 26 38 0 8 0.68415 26 39 0 8 0.658983 26 40 0 8 0.499142 26 41 0 8 0.637985 26 42 0 8 0.677843 26 43 0 8 0.517765 26 44 0 8 0.533416 26 45 0 8 0.58307 26 46 0 8 0.482867 26 47 0 8 0.661699 26 48 0 8 0.630075 26 49 0 8 0.588489 26 50 0 8 0.567545 26 51 0 8 0.478751 26 52 0 8 0.436987 27 36 0 8 0.65423 27 37 0 8 0.779338 27 38 0 8 0.750909 27 39 0 8 0.748559 27 40 0 8 0.559694 27 41 0 8 0.74033 27 42 0 8 0.790175 27 43 0 8 0.609845 27 44 0 8 0.657008 27 45 0 8 0.659872 27 46 0 8 0.544541 27 47 0 8 0.724417 27 48 0 8 0.65152 27 49 0 8 0.594701 27 50 0 8 0.545695 27 51 0 8 0.45414 27 52 0 8 0.430535 28 37 0 8 0.733748 28 38 0 8 0.728639 28 39 0 8 0.76229 28 40 0 8 0.546511 28 41 0 8 0.735843 28 42 0 8 0.825558 28 43 0 8 0.610746 28 44 0 8 0.748185 28 45 0 8 0.695759 28 46 0 8 0.575415 28 47 0 8 0.812571 28 48 0 8 0.67114 28 49 0 8 0.548845 28 50 0 8 0.472887 28 51 0 8 0.38446 28 52 0 8 0.401773 29 38 0 8 0.671598 29 39 0 8 0.777755 29 40 0 8 0.555736 29 41 0 8 0.683846 29 42 0 8 0.813834 29 43 0 8 0.6492 29 44 0 8 0.812322 29 45 0 8 0.727043 29 46 0 8 0.603354 29 47 0 8 0.868731 29 48 0 8 0.685496 29 49 0 8 0.460322 29 50 0 8 0.399086 29 52 0 8 0.362355 30 39 0 8 0.833175 30 40 0 8 0.646328 30 41 0 8 0.784483 30 42 0 8 0.873828 30 43 0 8 0.763841 30 44 0 8 0.887281 30 45 0 8 0.786603 30 46 0 8 0.578968 30 47 0 8 0.840798 30 48 0 8 0.570513 31 40 0 8 0.68958 31 41 0 8 0.797722 31 42 0 8 0.8994 31 43 0 8 0.814124 31 44 0 8 0.90513 31 45 0 8 0.873143 31 46 0 8 0.738808 31 47 0 8 0.904912 31 48 0 8 0.704984 31 49 0 8 0.456256 31 50 0 8 0.431775 31 51 0 8 0.3837 31 52 0 8 0.442397 32 41 0 8 0.727698 32 42 0 8 0.8365 32 43 0 8 0.730797 32 44 0 8 0.7811 32 45 0 8 0.758268 32 46 0 8 0.603669 32 47 0 8 0.680715 32 48 0 8 0.507572 32 49 0 8 0.384137 32 52 0 8 0.372609 33 42 0 8 0.873877 33 43 0 8 0.776787 33 44 0 8 0.787953 33 45 0 8 0.789704 33 46 0 8 0.637674 33 47 0 8 0.749848 33 48 0 8 0.599989 33 49 0 8 0.504802 33 50 0 8 0.476032 33 51 0 8 0.427547 33 52 0 8 0.464562 34 43 0 8 0.68027 34 44 0 8 0.705271 34 45 0 8 0.619669 34 46 0 8 0.52059 34 47 0 8 0.615659 34 48 0 8 0.527905 34 49 0 8 0.416228 34 50 0 8 0.408836 34 51 0 8 0.360105 34 52 0 8 0.388259 35 44 0 8 0.550789 35 45 0 8 0.508821 35 46 0 8 0.409624 35 47 0 8 0.496986 35 48 0 8 0.477218 35 49 0 8 0.401028 35 50 0 8 0.36931 36 45 0 8 0.758483 36 46 0 8 0.639743 36 47 0 8 0.74947 36 48 0 8 0.626395 36 49 0 8 0.530581 36 50 0 8 0.472442 36 51 0 8 0.382013 36 52 0 8 0.400436 37 46 0 8 0.654662 37 47 0 8 0.760575 37 48 0 8 0.630514 37 49 0 8 0.515227 37 50 0 8 0.453881 37 51 0 8 0.376045 37 52 0 8 0.423558 38 47 0 8 0.781094 38 48 0 8 0.662683 38 49 0 8 0.544012 38 50 0 8 0.466946 38 51 0 8 0.394266 38 52 0 8 0.434348 39 48 0 8 0.776184 39 49 0 8 0.658408 39 50 0 8 0.568254 39 51 0 8 0.474397 39 52 0 8 0.520195 40 49 0 8 0.670985 40 50 0 8 0.582402 40 51 0 8 0.481947 40 52 0 8 0.510376 41 50 0 8 0.49869 41 51 0 8 0.414827 41 52 0 8 0.417878 42 51 0 8 0.540389 42 52 0 8 0.528096 43 52 0 8 0.546946 END