PFRMAT RR TARGET T0480 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MQKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKA KKSKS 4 13 0 8 0.0187056 4 14 0 8 0.0900989 4 15 0 8 0.0665362 4 16 0 8 0.134244 4 17 0 8 0.12898 4 18 0 8 0.29789 4 19 0 8 0.142312 4 20 0 8 0.152728 4 21 0 8 0.0887799 4 22 0 8 0.0322035 4 23 0 8 0.0748104 4 24 0 8 0.054577 4 25 0 8 0.0358055 4 26 0 8 0.0394061 4 27 0 8 0.0337667 4 28 0 8 0.0508824 4 29 0 8 0.0621086 4 30 0 8 0.0809311 4 31 0 8 0.0841353 4 32 0 8 0.051384 4 33 0 8 0.0618803 4 34 0 8 0.0647318 4 36 0 8 0.0547432 4 37 0 8 0.048796 4 38 0 8 0.0982948 4 39 0 8 0.0442201 4 40 0 8 0.0348437 4 41 0 8 0.0382201 4 42 0 8 0.0569271 4 43 0 8 0.0813888 4 44 0 8 0.102276 4 45 0 8 0.0653751 4 46 0 8 0.158168 4 47 0 8 0.178153 4 48 0 8 0.071244 4 49 0 8 0.0677487 4 50 0 8 0.0586413 4 51 0 8 0.0526166 4 52 0 8 0.0589105 5 14 0 8 0.0672369 5 15 0 8 0.0670544 5 16 0 8 0.1921 5 17 0 8 0.332441 5 18 0 8 0.285131 5 19 0 8 0.140345 5 20 0 8 0.109374 5 21 0 8 0.111628 5 22 0 8 0.0242319 5 23 0 8 0.0246638 5 24 0 8 0.0454294 5 25 0 8 0.0249774 5 26 0 8 0.0276282 5 27 0 8 0.0376252 5 28 0 8 0.0348289 5 29 0 8 0.0351075 5 30 0 8 0.0542787 5 31 0 8 0.0473829 5 32 0 8 0.0385543 5 33 0 8 0.0337758 5 34 0 8 0.0740426 5 36 0 8 0.0517483 5 37 0 8 0.0421534 5 39 0 8 0.0254131 5 40 0 8 0.0200395 5 42 0 8 0.0493706 5 43 0 8 0.0358826 5 44 0 8 0.0581958 5 45 0 8 0.0478871 5 46 0 8 0.0628112 5 47 0 8 0.0864722 5 48 0 8 0.0496056 5 49 0 8 0.0433804 5 50 0 8 0.0395625 6 15 0 8 0.148211 6 16 0 8 0.588122 6 17 0 8 0.810108 6 18 0 8 0.211555 6 19 0 8 0.110282 6 20 0 8 0.168139 6 21 0 8 0.194405 6 22 0 8 0.0661045 6 23 0 8 0.0553717 6 24 0 8 0.110504 6 25 0 8 0.0540529 6 26 0 8 0.0574965 6 27 0 8 0.0556628 6 28 0 8 0.0748627 6 29 0 8 0.165602 6 30 0 8 0.145911 6 31 0 8 0.102008 6 32 0 8 0.0598266 6 33 0 8 0.0550902 6 34 0 8 0.0357699 6 36 0 8 0.0468072 6 37 0 8 0.0363446 6 38 0 8 0.036472 6 39 0 8 0.0536031 6 40 0 8 0.0466688 6 41 0 8 0.0430112 6 42 0 8 0.0815281 6 43 0 8 0.0756512 6 44 0 8 0.11281 6 45 0 8 0.0886162 6 46 0 8 0.0565412 6 47 0 8 0.0504163 6 48 0 8 0.031111 6 49 0 8 0.0234121 6 50 0 8 0.0174044 6 51 0 8 0.0157554 6 52 0 8 0.0137649 7 16 0 8 0.577087 7 17 0 8 0.648805 7 18 0 8 0.157209 7 19 0 8 0.151638 7 20 0 8 0.161107 7 21 0 8 0.22087 7 22 0 8 0.0957064 7 23 0 8 0.0803077 7 24 0 8 0.172138 7 25 0 8 0.0634179 7 26 0 8 0.0673187 7 27 0 8 0.0542979 7 28 0 8 0.0685275 7 29 0 8 0.109485 7 30 0 8 0.124496 7 31 0 8 0.187122 7 32 0 8 0.0838258 7 33 0 8 0.109721 7 34 0 8 0.0979688 7 36 0 8 0.0810685 7 37 0 8 0.0427419 7 38 0 8 0.0506134 7 39 0 8 0.0679 7 40 0 8 0.0520614 7 41 0 8 0.0634138 7 42 0 8 0.0798692 7 43 0 8 0.0530219 7 44 0 8 0.0980018 7 45 0 8 0.090906 7 46 0 8 0.0727607 7 47 0 8 0.0714881 7 48 0 8 0.0485252 7 49 0 8 0.0391347 7 50 0 8 0.0341633 8 17 0 8 0.462554 8 18 0 8 0.048773 8 19 0 8 0.0443562 8 20 0 8 0.0904685 8 21 0 8 0.0629055 8 26 0 8 0.0975185 8 27 0 8 0.0554733 8 44 0 8 0.0539537 9 18 0 8 0.0296299 9 20 0 8 0.0197415 9 21 0 8 0.0392429 9 24 0 8 0.0595393 9 26 0 8 0.0694682 9 27 0 8 0.0572962 9 28 0 8 0.108977 9 29 0 8 0.0860175 9 30 0 8 0.0628889 9 39 0 8 0.0578746 9 42 0 8 0.0836597 9 43 0 8 0.0425885 9 44 0 8 0.0764943 9 45 0 8 0.0548558 9 47 0 8 0.0583004 10 26 0 8 0.0333363 12 21 0 8 0.0235067 12 33 0 8 0.0146583 13 26 0 8 0.00875637 13 27 0 8 0.0171115 13 33 0 8 0.0141418 14 23 0 8 0.0133215 14 24 0 8 0.0648248 14 25 0 8 0.0234122 14 26 0 8 0.024098 14 27 0 8 0.025926 14 28 0 8 0.0479723 14 29 0 8 0.0501998 14 30 0 8 0.0616733 14 31 0 8 0.0416382 14 32 0 8 0.0210461 14 33 0 8 0.0228906 14 36 0 8 0.0339542 14 37 0 8 0.0400233 14 38 0 8 0.0217104 14 39 0 8 0.0414884 14 40 0 8 0.0226413 14 41 0 8 0.0171848 14 42 0 8 0.0685453 14 43 0 8 0.0244431 14 44 0 8 0.0655492 14 45 0 8 0.0395965 14 47 0 8 0.0704966 14 48 0 8 0.0424153 15 24 0 8 0.0270832 15 25 0 8 0.0162517 15 26 0 8 0.0280544 15 27 0 8 0.0223689 15 28 0 8 0.058473 15 29 0 8 0.0536257 15 30 0 8 0.0468077 15 31 0 8 0.0335395 15 33 0 8 0.0339469 15 47 0 8 0.130602 16 25 0 8 0.0204915 16 26 0 8 0.0174274 16 27 0 8 0.0192497 16 28 0 8 0.0214444 16 29 0 8 0.0258217 16 30 0 8 0.032027 16 31 0 8 0.0327618 16 33 0 8 0.0259147 16 37 0 8 0.0300772 16 38 0 8 0.0231396 16 39 0 8 0.0379603 16 40 0 8 0.0275153 16 42 0 8 0.0520877 16 43 0 8 0.0273093 16 44 0 8 0.0593504 16 45 0 8 0.0375191 16 47 0 8 0.0508805 17 26 0 8 0.0400187 17 27 0 8 0.0307233 17 28 0 8 0.0281659 17 29 0 8 0.0379061 17 30 0 8 0.0433063 17 31 0 8 0.0379976 17 32 0 8 0.0354977 17 33 0 8 0.0352064 17 36 0 8 0.0312677 17 37 0 8 0.0317248 17 38 0 8 0.0412875 17 39 0 8 0.021643 17 40 0 8 0.0166537 17 41 0 8 0.0208932 17 42 0 8 0.0359081 17 43 0 8 0.0456737 17 44 0 8 0.0814814 17 45 0 8 0.0486571 17 46 0 8 0.0827768 17 47 0 8 0.0855571 17 48 0 8 0.0342477 18 27 0 8 0.0349214 18 28 0 8 0.0324005 18 29 0 8 0.0444398 18 30 0 8 0.040111 18 31 0 8 0.0493272 18 32 0 8 0.0444859 18 33 0 8 0.0497406 18 34 0 8 0.0321346 18 35 0 8 0.0353862 18 36 0 8 0.0395639 18 37 0 8 0.0332038 18 38 0 8 0.0314562 18 39 0 8 0.0333157 18 40 0 8 0.0301319 18 41 0 8 0.0344807 18 42 0 8 0.0467719 18 43 0 8 0.0465533 18 44 0 8 0.0562761 18 45 0 8 0.0573768 18 46 0 8 0.0442566 18 47 0 8 0.0638352 18 48 0 8 0.0317315 19 28 0 8 0.0489427 19 29 0 8 0.0479958 19 30 0 8 0.0516686 19 31 0 8 0.0479758 19 32 0 8 0.0273536 19 33 0 8 0.0493481 19 34 0 8 0.0200065 19 35 0 8 0.0210319 19 36 0 8 0.0557412 19 37 0 8 0.0402378 19 38 0 8 0.049766 19 39 0 8 0.0670781 19 40 0 8 0.0594219 19 41 0 8 0.0549449 19 42 0 8 0.103465 19 43 0 8 0.0709305 19 44 0 8 0.097571 19 45 0 8 0.0868031 19 46 0 8 0.051672 19 47 0 8 0.0669897 20 29 0 8 0.0649418 20 30 0 8 0.0507205 20 31 0 8 0.0489756 20 32 0 8 0.0302308 20 33 0 8 0.035421 20 34 0 8 0.0330989 20 36 0 8 0.0511205 20 37 0 8 0.0540552 20 38 0 8 0.0801323 20 39 0 8 0.0535945 20 40 0 8 0.034597 20 41 0 8 0.0562904 20 42 0 8 0.0919701 20 43 0 8 0.0786713 20 44 0 8 0.112155 20 45 0 8 0.0665663 20 46 0 8 0.0928848 20 47 0 8 0.0793871 20 48 0 8 0.0522256 21 30 0 8 0.114071 21 31 0 8 0.0941679 21 32 0 8 0.0195627 21 33 0 8 0.0789461 21 34 0 8 0.0176892 21 35 0 8 0.0194941 21 36 0 8 0.0894804 21 37 0 8 0.0467567 21 38 0 8 0.0952837 21 39 0 8 0.246514 21 40 0 8 0.13631 21 41 0 8 0.0928089 21 42 0 8 0.366153 21 43 0 8 0.112117 21 44 0 8 0.125295 21 45 0 8 0.096453 21 46 0 8 0.052188 21 47 0 8 0.0737591 21 48 0 8 0.0526902 22 31 0 8 0.0429623 22 32 0 8 0.0167898 22 33 0 8 0.0315956 22 34 0 8 0.0168571 22 35 0 8 0.0190475 22 36 0 8 0.0363567 22 37 0 8 0.0523226 22 38 0 8 0.0672032 22 39 0 8 0.115647 22 40 0 8 0.0966197 22 41 0 8 0.0822954 22 42 0 8 0.109457 22 43 0 8 0.0598784 22 44 0 8 0.103024 22 45 0 8 0.0499997 23 32 0 8 0.0334918 23 33 0 8 0.0442375 23 34 0 8 0.0316485 23 35 0 8 0.0220273 23 36 0 8 0.0357773 23 37 0 8 0.0700411 23 38 0 8 0.159182 23 39 0 8 0.0768664 23 40 0 8 0.0553629 23 41 0 8 0.125051 23 42 0 8 0.102516 23 43 0 8 0.12313 23 44 0 8 0.163186 23 45 0 8 0.0449003 24 33 0 8 0.0804281 24 34 0 8 0.0294861 24 35 0 8 0.0359715 24 36 0 8 0.104913 24 37 0 8 0.0659019 24 38 0 8 0.101496 24 39 0 8 0.292365 24 40 0 8 0.159437 24 41 0 8 0.115994 24 42 0 8 0.262005 24 43 0 8 0.089682 24 44 0 8 0.115779 24 45 0 8 0.0544453 24 46 0 8 0.0358877 24 47 0 8 0.0584184 24 48 0 8 0.0381317 25 34 0 8 0.0223156 25 35 0 8 0.0260861 25 36 0 8 0.0477455 25 37 0 8 0.048474 25 38 0 8 0.0512582 25 39 0 8 0.0971467 25 40 0 8 0.0778131 25 41 0 8 0.0710505 25 42 0 8 0.119671 25 43 0 8 0.0449201 25 44 0 8 0.0724593 25 45 0 8 0.0373339 25 46 0 8 0.0340139 25 47 0 8 0.0453361 25 48 0 8 0.0274714 25 49 0 8 0.0233227 25 50 0 8 0.0189704 25 51 0 8 0.0173679 25 52 0 8 0.0161195 26 35 0 8 0.0802101 26 36 0 8 0.105591 26 37 0 8 0.169752 26 38 0 8 0.125586 26 39 0 8 0.0889213 26 40 0 8 0.0693705 26 41 0 8 0.0950227 26 42 0 8 0.106073 26 43 0 8 0.0940769 26 44 0 8 0.13026 26 45 0 8 0.0848358 26 46 0 8 0.112139 26 47 0 8 0.111805 26 48 0 8 0.120952 26 49 0 8 0.110786 26 50 0 8 0.0741674 26 51 0 8 0.059599 26 52 0 8 0.0771545 27 36 0 8 0.179576 27 37 0 8 0.0828258 27 38 0 8 0.102029 27 39 0 8 0.149661 27 40 0 8 0.140546 27 41 0 8 0.104058 27 42 0 8 0.159624 27 43 0 8 0.0973399 27 44 0 8 0.146722 27 45 0 8 0.185026 27 46 0 8 0.12366 27 47 0 8 0.11082 27 48 0 8 0.0984467 27 49 0 8 0.0846749 27 50 0 8 0.071277 27 51 0 8 0.0660204 27 52 0 8 0.0594275 28 37 0 8 0.25008 28 38 0 8 0.0958795 28 39 0 8 0.13431 28 40 0 8 0.0770093 28 41 0 8 0.0783151 28 42 0 8 0.238374 28 43 0 8 0.0953672 28 44 0 8 0.181641 28 45 0 8 0.159456 28 46 0 8 0.152924 28 47 0 8 0.155308 28 48 0 8 0.112118 28 49 0 8 0.0749761 28 50 0 8 0.0590123 28 51 0 8 0.047587 28 52 0 8 0.060317 29 38 0 8 0.13102 29 39 0 8 0.226709 29 40 0 8 0.178804 29 41 0 8 0.110229 29 42 0 8 0.262041 29 43 0 8 0.10641 29 44 0 8 0.199793 29 45 0 8 0.255176 29 46 0 8 0.118105 29 47 0 8 0.167674 29 48 0 8 0.0824649 29 49 0 8 0.0625238 29 50 0 8 0.0470726 29 52 0 8 0.0458918 30 39 0 8 0.199245 30 40 0 8 0.142464 30 41 0 8 0.0813498 30 42 0 8 0.266917 30 43 0 8 0.115295 30 44 0 8 0.319574 30 45 0 8 0.390116 30 46 0 8 0.0937431 30 47 0 8 0.114921 30 48 0 8 0.0687969 31 40 0 8 0.239385 31 41 0 8 0.09847 31 42 0 8 0.316552 31 43 0 8 0.155475 31 44 0 8 0.202317 31 45 0 8 0.302565 31 46 0 8 0.0839457 31 47 0 8 0.125521 31 48 0 8 0.060674 31 49 0 8 0.0351616 31 50 0 8 0.0338774 31 51 0 8 0.0323046 31 52 0 8 0.0330921 32 41 0 8 0.0709746 32 42 0 8 0.117804 32 43 0 8 0.154159 32 44 0 8 0.198119 32 45 0 8 0.0783186 32 46 0 8 0.0823371 32 47 0 8 0.0970891 32 48 0 8 0.0742888 32 49 0 8 0.0425751 32 52 0 8 0.048188 33 42 0 8 0.182894 33 43 0 8 0.13548 33 44 0 8 0.136276 33 45 0 8 0.0907791 33 46 0 8 0.0337754 33 47 0 8 0.0585899 33 48 0 8 0.032648 33 49 0 8 0.0201212 33 50 0 8 0.020392 33 51 0 8 0.0229709 33 52 0 8 0.0241794 34 43 0 8 0.0630459 34 44 0 8 0.116792 34 45 0 8 0.0484941 34 46 0 8 0.0693445 34 47 0 8 0.116426 34 48 0 8 0.0506273 34 49 0 8 0.0283606 34 50 0 8 0.0285497 34 51 0 8 0.0372661 34 52 0 8 0.0338811 35 44 0 8 0.0831554 35 45 0 8 0.0405008 35 46 0 8 0.0488325 35 47 0 8 0.0886932 35 48 0 8 0.0716404 35 49 0 8 0.0531472 35 50 0 8 0.0413165 36 45 0 8 0.0464635 36 46 0 8 0.0422448 36 47 0 8 0.0674088 36 48 0 8 0.0491165 36 49 0 8 0.0324484 36 50 0 8 0.0288209 36 51 0 8 0.0272216 36 52 0 8 0.0264254 37 46 0 8 0.0745793 37 47 0 8 0.111778 37 48 0 8 0.0456567 37 49 0 8 0.037872 37 50 0 8 0.0225273 37 51 0 8 0.0304553 37 52 0 8 0.0649141 38 47 0 8 0.12759 38 48 0 8 0.0553234 38 49 0 8 0.0502922 38 50 0 8 0.0338266 38 51 0 8 0.0314416 38 52 0 8 0.0513263 39 48 0 8 0.0450604 39 49 0 8 0.0295038 39 50 0 8 0.0292808 39 51 0 8 0.0316387 39 52 0 8 0.0274872 40 49 0 8 0.0284085 40 50 0 8 0.0256457 40 51 0 8 0.0274945 40 52 0 8 0.024906 41 50 0 8 0.055084 41 51 0 8 0.0534798 41 52 0 8 0.0535964 42 51 0 8 0.0483138 42 52 0 8 0.0502265 43 52 0 8 0.18722 END