PFRMAT RR TARGET T0480 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 1 MODEL 1 MQKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKA KKSKS 3 13 0 8 0.533552 3 14 0 8 0.711689 3 15 0 8 0.573985 3 16 0 8 0.924976 3 17 0 8 0.942442 3 18 0 8 0.892506 3 19 0 8 0.794864 3 20 0 8 0.815352 3 21 0 8 0.715089 3 22 0 8 0.539561 3 23 0 8 0.535818 3 24 0 8 0.535418 3 25 0 8 0.506853 3 26 0 8 0.579732 3 27 0 8 0.593564 3 28 0 8 0.61637 3 29 0 8 0.663195 3 30 0 8 0.682357 3 31 0 8 0.595592 3 32 0 8 0.541499 3 33 0 8 0.534457 3 34 0 8 0.518307 3 36 0 8 0.50551 3 37 0 8 0.613306 3 38 0 8 0.497085 3 39 0 8 0.528061 3 40 0 8 0.51223 3 41 0 8 0.528878 3 42 0 8 0.615913 3 43 0 8 0.471058 3 44 0 8 0.678623 3 45 0 8 0.532753 3 46 0 8 0.550358 3 47 0 8 0.775209 3 48 0 8 0.644398 3 49 0 8 0.578387 3 50 0 8 0.572782 3 51 0 8 0.440309 3 52 0 8 0.464447 3 53 0 8 0.471589 4 13 0 8 0.520825 4 14 0 8 0.798275 4 15 0 8 0.676731 4 16 0 8 0.948791 4 17 0 8 0.975034 4 18 0 8 0.932365 4 19 0 8 0.861304 4 20 0 8 0.908414 4 21 0 8 0.750702 4 22 0 8 0.538691 4 23 0 8 0.648236 4 24 0 8 0.559045 4 25 0 8 0.481556 4 26 0 8 0.646161 4 27 0 8 0.669032 4 28 0 8 0.738796 4 29 0 8 0.773636 4 30 0 8 0.736662 4 31 0 8 0.700916 4 32 0 8 0.593474 4 33 0 8 0.578075 4 34 0 8 0.567623 4 36 0 8 0.543069 4 37 0 8 0.696234 4 38 0 8 0.732439 4 39 0 8 0.540453 4 40 0 8 0.558709 4 41 0 8 0.561162 4 42 0 8 0.661315 4 43 0 8 0.605492 4 44 0 8 0.773569 4 45 0 8 0.580161 4 46 0 8 0.748736 4 47 0 8 0.888828 4 48 0 8 0.733453 4 49 0 8 0.669352 4 50 0 8 0.616514 4 51 0 8 0.451695 4 52 0 8 0.495359 4 53 0 8 0.549919 5 14 0 8 0.512532 5 15 0 8 0.603766 5 16 0 8 0.916285 5 17 0 8 0.942255 5 18 0 8 0.913498 5 19 0 8 0.832471 5 20 0 8 0.815383 5 21 0 8 0.697194 5 22 0 8 0.481435 5 23 0 8 0.455435 5 24 0 8 0.439144 5 25 0 8 0.47123 5 26 0 8 0.53068 5 27 0 8 0.555521 5 28 0 8 0.564054 5 29 0 8 0.527851 5 30 0 8 0.531754 5 34 0 8 0.444403 5 36 0 8 0.46356 5 37 0 8 0.538086 5 40 0 8 0.462917 5 42 0 8 0.532258 5 43 0 8 0.435148 5 44 0 8 0.562668 5 45 0 8 0.490825 5 46 0 8 0.485754 5 47 0 8 0.656927 5 48 0 8 0.529563 5 49 0 8 0.473195 5 50 0 8 0.440512 6 15 0 8 0.769493 6 16 0 8 0.965689 6 17 0 8 0.986062 6 18 0 8 0.949273 6 19 0 8 0.860282 6 20 0 8 0.828362 6 21 0 8 0.803628 6 22 0 8 0.625835 6 24 0 8 0.544851 6 25 0 8 0.565042 6 26 0 8 0.646181 6 27 0 8 0.783726 6 28 0 8 0.788728 6 29 0 8 0.845143 6 30 0 8 0.845714 6 31 0 8 0.744206 6 32 0 8 0.578468 6 33 0 8 0.594324 6 36 0 8 0.512911 6 37 0 8 0.609346 6 38 0 8 0.444942 6 39 0 8 0.452785 6 40 0 8 0.627361 6 41 0 8 0.460502 6 42 0 8 0.588448 6 43 0 8 0.64758 6 44 0 8 0.789171 6 45 0 8 0.714654 6 46 0 8 0.672099 6 47 0 8 0.833094 6 48 0 8 0.683448 7 16 0 8 0.984914 7 17 0 8 0.986767 7 18 0 8 0.940891 7 19 0 8 0.875122 7 20 0 8 0.704949 7 21 0 8 0.821004 7 22 0 8 0.575998 7 24 0 8 0.619903 7 25 0 8 0.549395 7 26 0 8 0.569883 7 27 0 8 0.792978 7 28 0 8 0.799278 7 29 0 8 0.836425 7 30 0 8 0.848284 7 31 0 8 0.77275 7 33 0 8 0.61418 7 36 0 8 0.546351 7 37 0 8 0.47756 7 39 0 8 0.497972 7 40 0 8 0.650155 7 41 0 8 0.446938 7 42 0 8 0.62585 7 43 0 8 0.646211 7 44 0 8 0.75923 7 45 0 8 0.72634 7 46 0 8 0.61823 7 47 0 8 0.802717 7 48 0 8 0.62155 8 17 0 8 0.93695 8 18 0 8 0.744492 8 19 0 8 0.525199 8 20 0 8 0.503309 8 26 0 8 0.52806 8 27 0 8 0.629693 8 28 0 8 0.635548 8 29 0 8 0.47821 8 42 0 8 0.499307 8 43 0 8 0.443076 8 44 0 8 0.494542 8 45 0 8 0.45579 9 18 0 8 0.638207 9 19 0 8 0.548314 9 20 0 8 0.498798 9 21 0 8 0.46672 9 24 0 8 0.510517 9 26 0 8 0.536619 9 27 0 8 0.703841 9 28 0 8 0.607829 9 29 0 8 0.542815 9 30 0 8 0.436328 9 31 0 8 0.44101 9 37 0 8 0.489138 9 39 0 8 0.459797 9 42 0 8 0.490456 9 44 0 8 0.532729 9 45 0 8 0.453616 9 47 0 8 0.440605 10 27 0 8 0.467271 11 20 0 8 0.479702 11 26 0 8 0.464784 12 21 0 8 0.50774 12 36 0 8 0.445889 12 49 0 8 0.455129 13 24 0 8 0.44182 14 24 0 8 0.644925 14 25 0 8 0.491136 14 26 0 8 0.553402 14 27 0 8 0.656976 14 28 0 8 0.767727 14 29 0 8 0.756383 14 30 0 8 0.823628 14 31 0 8 0.719525 14 32 0 8 0.46173 14 33 0 8 0.598701 14 36 0 8 0.50697 14 37 0 8 0.509308 14 39 0 8 0.570177 14 40 0 8 0.544635 14 41 0 8 0.555414 14 42 0 8 0.650422 14 44 0 8 0.740505 14 45 0 8 0.478803 14 46 0 8 0.466788 14 47 0 8 0.715023 14 48 0 8 0.587561 14 50 0 8 0.534861 15 26 0 8 0.563709 15 27 0 8 0.457168 15 28 0 8 0.601463 15 29 0 8 0.503191 15 30 0 8 0.462113 15 37 0 8 0.495255 15 44 0 8 0.557097 15 46 0 8 0.446367 15 47 0 8 0.730446 15 48 0 8 0.482391 16 25 0 8 0.519567 16 26 0 8 0.500154 16 27 0 8 0.599025 16 28 0 8 0.574829 16 29 0 8 0.539915 16 30 0 8 0.489196 16 37 0 8 0.449755 16 39 0 8 0.464211 16 40 0 8 0.46901 16 42 0 8 0.556759 16 44 0 8 0.484899 16 45 0 8 0.457453 16 47 0 8 0.445785 17 26 0 8 0.585577 17 27 0 8 0.695129 17 28 0 8 0.677941 17 29 0 8 0.730773 17 30 0 8 0.660131 17 31 0 8 0.525861 17 37 0 8 0.55913 17 38 0 8 0.47266 17 40 0 8 0.468543 17 41 0 8 0.453701 17 42 0 8 0.557254 17 43 0 8 0.489098 17 44 0 8 0.70974 17 45 0 8 0.529937 17 46 0 8 0.523881 17 47 0 8 0.668927 17 48 0 8 0.487198 18 27 0 8 0.71716 18 28 0 8 0.701825 18 29 0 8 0.704791 18 30 0 8 0.581776 18 31 0 8 0.499626 18 32 0 8 0.457102 18 33 0 8 0.484906 18 34 0 8 0.492586 18 36 0 8 0.568806 18 37 0 8 0.615833 18 38 0 8 0.508875 18 39 0 8 0.521689 18 40 0 8 0.564925 18 41 0 8 0.513235 18 42 0 8 0.635354 18 43 0 8 0.577014 18 44 0 8 0.628788 18 45 0 8 0.593211 18 46 0 8 0.518955 18 47 0 8 0.658423 18 48 0 8 0.533506 18 49 0 8 0.487902 18 50 0 8 0.471821 19 28 0 8 0.681997 19 29 0 8 0.662106 19 30 0 8 0.588671 19 31 0 8 0.44247 19 32 0 8 0.462307 19 33 0 8 0.455626 19 36 0 8 0.561916 19 37 0 8 0.558296 19 38 0 8 0.504054 19 39 0 8 0.530289 19 40 0 8 0.550114 19 41 0 8 0.48664 19 42 0 8 0.628349 19 43 0 8 0.510741 19 44 0 8 0.54812 19 45 0 8 0.570068 19 46 0 8 0.477443 19 47 0 8 0.506054 19 48 0 8 0.44204 19 49 0 8 0.488835 20 29 0 8 0.708925 20 30 0 8 0.592776 20 31 0 8 0.503693 20 32 0 8 0.627811 20 33 0 8 0.482534 20 34 0 8 0.554383 20 36 0 8 0.470984 20 37 0 8 0.743331 20 38 0 8 0.662377 20 39 0 8 0.561467 20 40 0 8 0.51159 20 41 0 8 0.522993 20 42 0 8 0.664964 20 43 0 8 0.55314 20 44 0 8 0.648323 20 45 0 8 0.54972 20 46 0 8 0.606845 20 47 0 8 0.692121 20 48 0 8 0.532818 20 49 0 8 0.444065 21 30 0 8 0.769127 21 31 0 8 0.768284 21 32 0 8 0.442925 21 33 0 8 0.730845 21 36 0 8 0.716794 21 37 0 8 0.685011 21 38 0 8 0.674666 21 39 0 8 0.849109 21 40 0 8 0.738656 21 41 0 8 0.728417 21 42 0 8 0.923342 21 43 0 8 0.604639 21 44 0 8 0.687272 21 45 0 8 0.640117 21 46 0 8 0.462449 21 47 0 8 0.576668 22 31 0 8 0.504953 22 33 0 8 0.522742 22 36 0 8 0.537023 22 37 0 8 0.617941 22 38 0 8 0.559676 22 39 0 8 0.627099 22 40 0 8 0.568957 22 41 0 8 0.528364 22 42 0 8 0.668423 22 43 0 8 0.484835 22 44 0 8 0.498327 22 45 0 8 0.493796 23 32 0 8 0.57138 23 33 0 8 0.54011 23 34 0 8 0.522779 23 36 0 8 0.545413 23 37 0 8 0.708637 23 38 0 8 0.694607 23 39 0 8 0.636537 23 40 0 8 0.582722 23 41 0 8 0.612847 23 42 0 8 0.690996 23 43 0 8 0.598988 23 44 0 8 0.629332 23 45 0 8 0.473232 23 46 0 8 0.62306 23 47 0 8 0.675391 23 48 0 8 0.440942 24 33 0 8 0.769127 24 34 0 8 0.483336 24 35 0 8 0.459798 24 36 0 8 0.798786 24 37 0 8 0.710595 24 38 0 8 0.701374 24 39 0 8 0.886845 24 40 0 8 0.774399 24 41 0 8 0.734715 24 42 0 8 0.893781 24 43 0 8 0.578954 24 44 0 8 0.660754 24 45 0 8 0.624102 24 47 0 8 0.571615 25 36 0 8 0.590525 25 37 0 8 0.644602 25 38 0 8 0.606596 25 39 0 8 0.699536 25 40 0 8 0.64158 25 41 0 8 0.603292 25 42 0 8 0.794513 25 43 0 8 0.512698 25 44 0 8 0.52348 25 45 0 8 0.528913 25 47 0 8 0.585495 26 35 0 8 0.56968 26 36 0 8 0.564356 26 37 0 8 0.788859 26 38 0 8 0.683573 26 39 0 8 0.673495 26 40 0 8 0.580307 26 41 0 8 0.638839 26 42 0 8 0.716796 26 43 0 8 0.539146 26 44 0 8 0.659359 26 45 0 8 0.522662 26 46 0 8 0.486459 26 47 0 8 0.653769 26 48 0 8 0.623851 26 49 0 8 0.583504 26 50 0 8 0.507505 26 52 0 8 0.464894 27 36 0 8 0.738844 27 37 0 8 0.716039 27 38 0 8 0.688367 27 39 0 8 0.817782 27 40 0 8 0.724213 27 41 0 8 0.673699 27 42 0 8 0.834978 27 43 0 8 0.584171 27 44 0 8 0.698243 27 45 0 8 0.711148 27 46 0 8 0.521353 27 47 0 8 0.655393 27 48 0 8 0.535642 27 49 0 8 0.441404 28 37 0 8 0.836169 28 38 0 8 0.708854 28 39 0 8 0.763445 28 40 0 8 0.66958 28 41 0 8 0.673073 28 42 0 8 0.843843 28 43 0 8 0.595752 28 44 0 8 0.755496 28 45 0 8 0.651384 28 46 0 8 0.576511 28 47 0 8 0.768095 28 48 0 8 0.652216 28 49 0 8 0.50542 28 50 0 8 0.504311 28 52 0 8 0.468 28 53 0 8 0.439554 29 38 0 8 0.776276 29 39 0 8 0.822858 29 40 0 8 0.794078 29 41 0 8 0.727177 29 42 0 8 0.885565 29 43 0 8 0.721674 29 44 0 8 0.823765 29 45 0 8 0.798714 29 46 0 8 0.698682 29 47 0 8 0.835247 29 48 0 8 0.663763 29 49 0 8 0.478538 29 50 0 8 0.451504 30 39 0 8 0.838102 30 40 0 8 0.817283 30 41 0 8 0.744543 30 42 0 8 0.891387 30 43 0 8 0.752442 30 44 0 8 0.864121 30 45 0 8 0.843378 30 46 0 8 0.708837 30 47 0 8 0.778978 30 48 0 8 0.61869 31 40 0 8 0.844174 31 41 0 8 0.753869 31 42 0 8 0.915599 31 43 0 8 0.800137 31 44 0 8 0.832654 31 45 0 8 0.835265 31 46 0 8 0.703785 31 47 0 8 0.814956 31 48 0 8 0.656311 31 50 0 8 0.456357 32 41 0 8 0.604961 32 42 0 8 0.767076 32 43 0 8 0.707351 32 44 0 8 0.834438 32 45 0 8 0.681708 32 46 0 8 0.748537 32 47 0 8 0.786752 32 48 0 8 0.776968 32 49 0 8 0.622297 32 50 0 8 0.485786 32 51 0 8 0.443389 32 52 0 8 0.514041 32 53 0 8 0.534398 33 42 0 8 0.86835 33 43 0 8 0.719835 33 44 0 8 0.720859 33 45 0 8 0.729239 33 46 0 8 0.590886 33 47 0 8 0.666862 33 48 0 8 0.523668 34 43 0 8 0.594249 34 44 0 8 0.720676 34 45 0 8 0.555447 34 46 0 8 0.646658 34 47 0 8 0.713807 34 48 0 8 0.543636 34 49 0 8 0.486711 34 50 0 8 0.49338 34 51 0 8 0.460111 34 52 0 8 0.436232 34 53 0 8 0.545037 35 44 0 8 0.55205 35 45 0 8 0.506368 35 47 0 8 0.453539 36 45 0 8 0.681022 36 46 0 8 0.503977 36 47 0 8 0.621566 36 48 0 8 0.521894 36 49 0 8 0.453271 36 50 0 8 0.454732 37 46 0 8 0.719612 37 47 0 8 0.848661 37 48 0 8 0.652206 37 49 0 8 0.676704 37 50 0 8 0.512109 37 52 0 8 0.546699 37 53 0 8 0.473839 38 47 0 8 0.739145 38 48 0 8 0.552445 38 49 0 8 0.535685 38 50 0 8 0.494911 38 52 0 8 0.480462 39 48 0 8 0.632382 39 49 0 8 0.519152 39 50 0 8 0.520095 39 51 0 8 0.446592 39 52 0 8 0.470688 39 53 0 8 0.466834 40 49 0 8 0.531067 40 50 0 8 0.477309 40 53 0 8 0.440508 41 50 0 8 0.492381 41 51 0 8 0.464345 41 52 0 8 0.468262 41 53 0 8 0.4484 42 51 0 8 0.490926 42 52 0 8 0.525155 42 53 0 8 0.525084 43 52 0 8 0.615903 43 53 0 8 0.514872 44 53 0 8 0.624159 END