# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.08e-10		
2e55A	208	12.22		
2b9kA	47	14.71		
2il5A	171	15.70		
1gln	468	15.80		
1zn6A	227	22.85	d.303.1.1	125373
1x7vA	99	23.95	d.58.4.11	109501
1xe0A	114	27.45	b.121.3.1	115197
2rghA	571	30.25		
1uokA	558	31.39	b.71.1.1,c.1.8.1	27801,28788
2gffA	106	34.12		
1e79H	146	34.14	a.2.10.1,b.93.1.1	15721,28438
1bd3A	243	35.04	c.61.1.1	34098
2c1fA	234	35.44		
2bbeA	108	36.48		
2f20A	240	37.93	d.303.1.1	132791
2vccA	891	44.39		
1cjxA	357	45.20	d.32.1.3,d.32.1.3	38516,38517
1v8cA	168	47.20	d.15.3.1,d.129.5.1	100495,100496
1whnA	128	47.67	d.50.1.1	114648
2yrlA	102	49.83		
1lmhA	184	54.06	d.167.1.1	74036
1yd0A	96	54.58		
1j09A	468	58.07	a.97.1.1,c.26.1.1	77025,77026
1o7zA	77	60.33	d.9.1.1	86660
1v3yA	192	61.01	d.167.1.1	113508
1lqwA	183	65.51	d.167.1.1	74210
1kzfA	230	67.57	d.108.1.3	73354
1e42A	258	69.30	b.1.10.1,d.105.1.1	22316,40792
1k5jA	124	74.99	b.121.3.1	68201
1f5yA	85	76.64	g.12.1.1,g.12.1.1	44610,44611
2dk1A	50	76.67	b.72.1.1	131550
1j8eA	44	78.31	g.12.1.1	66437
2p36A	335	78.31		
1yf5L	254	80.88	c.55.1.11,c.55.1.11	123049,123050
2ho2A	38	81.16		
1ajjA	37	83.18	g.12.1.1	44609
1ajj	37	85.41		
1izoA	417	85.93	a.104.1.1	83851
2icuA	229	87.86		
1v9sA	208	87.91	c.61.1.1	119894
1ro5A	201	88.32	d.108.1.3	105023
1nlqA	108	88.74	b.121.3.1	85853
1irsA	112	89.98	b.55.1.2	26991