# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.74e-10		
2b9kA	47	4.916		
2il5A	171	5.418		
2e55A	208	8.179		
1uokA	558	15.68	b.71.1.1,c.1.8.1	27801,28788
2c1fA	234	16.96		
1e79H	146	17.51	a.2.10.1,b.93.1.1	15721,28438
1zn6A	227	21.01	d.303.1.1	125373
1gln	468	23.50		
2rghA	571	24.52		
1x7vA	99	25.33	d.58.4.11	109501
1v3yA	192	29.73	d.167.1.1	113508
2rp4A	76	31.09		
2bbeA	108	32.01		
1xe0A	114	32.54	b.121.3.1	115197
1v8cA	168	32.66	d.15.3.1,d.129.5.1	100495,100496
2gffA	106	35.29		
1bd3A	243	37.76	c.61.1.1	34098
2f20A	240	39.52	d.303.1.1	132791
2e74D	179	41.80	b.33.1.1,f.23.12.1	132049,132050
2bokL	55	42.70	g.3.11.1	128917
1kzfA	230	46.77	d.108.1.3	73354
1g8kB	133	49.10	b.33.1.1	24435
1lmhA	184	56.03	d.167.1.1	74036
1z6eB	52	63.47	g.3.11.1	124519
1irsA	112	64.74	b.55.1.2	26991
2ze0A	555	65.85		
1lqwA	183	67.08	d.167.1.1	74210
1j8eA	44	67.95	g.12.1.1	66437
1yd0A	96	68.86		
1ro5A	201	70.87	d.108.1.3	105023
1cjxA	357	71.79	d.32.1.3,d.32.1.3	38516,38517
1e42A	258	74.82	b.1.10.1,d.105.1.1	22316,40792
2a08A	60	75.61		
2ip6A	112	77.26		
1lm4A	194	78.32	d.167.1.1	84626
1ajjA	37	78.69	g.12.1.1	44609
1a48	306	79.42		
2icuA	229	79.54		
2vccA	891	80.06		
1nd6A	354	80.74	c.60.1.2	80407
1ajj	37	83.63		
1xfsA	178	84.19	d.129.3.5	109589
2g3wA	182	84.48		
1o7zA	77	85.40	d.9.1.1	86660
2nugA	221	85.67