Best Alignments for T0469

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2fi0A	1.8105e-02	2fi0A/T0469-2fi0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.248.1.1
1fe0A	8.6697e+00	1fe0A/T0469-1fe0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1e0gA	1.1673e+01	1e0gA/T0469-1e0gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.7.1.1
1cc8A	1.7256e+01	1cc8A/T0469-1cc8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.17.1
1w7jA	3.4130e+01	1w7jA/T0469-1w7jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.3.1 c.37.1.9
2imfA	3.5086e+01	2imfA/T0469-2imfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1w9iA	3.5204e+01	1w9iA/T0469-1w9iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2akaA	3.6791e+01	2akaA/T0469-2akaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1txgA	3.8066e+01	1txgA/T0469-1txgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.6 c.2.1.6
1qupA	3.8843e+01	1qupA/T0469-1qupA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.8.1 d.58.17.1
2bkhA	3.9609e+01	2bkhA/T0469-2bkhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qnuA	4.2530e+01	2qnuA/T0469-2qnuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ofyA	5.2109e+01	2ofyA/T0469-2ofyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1su0B	5.8722e+01	1su0B/T0469-1su0B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cs8A	5.9767e+01	2cs8A/T0469-2cs8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rjbA	5.9917e+01	2rjbA/T0469-2rjbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fasA	5.9947e+01	1fasA/T0469-1fasA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1q48A	6.0802e+01	1q48A/T0469-1q48A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.224.1.2
1cztA	6.2606e+01	1cztA/T0469-1cztA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dlwA	6.3558e+01	1dlwA/T0469-1dlwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001