# TARGET T0469 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0469.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 14.2513 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.036 0.061 0.133 0.187 0.006 0.046 0.019 0.010 0.006 0.004 0.122 0.083 0.246 0.005 0.013 0.024 2 T 0.013 0.049 0.083 0.075 0.005 0.278 0.014 0.006 0.005 0.002 0.020 0.122 0.304 0.006 0.007 0.013 3 Q 0.018 0.052 0.057 0.108 0.001 0.027 0.003 0.007 0.003 0.001 0.334 0.027 0.325 0.001 0.006 0.030 4 K 0.021 0.122 0.129 0.204 0.002 0.040 0.009 0.001 0.008 0.001 0.011 0.190 0.193 0.004 0.002 0.063 5 F 0.022 0.014 0.363 0.126 0.003 0.041 0.017 0.003 0.001 0.001 0.023 0.018 0.349 0.003 0.007 0.009 6 T 0.003 0.050 0.052 0.057 0.008 0.460 0.012 0.004 0.002 0.001 0.017 0.033 0.281 0.006 0.003 0.010 7 K 0.012 0.036 0.012 0.063 0.001 0.038 0.003 0.007 0.001 0.001 0.530 0.028 0.247 0.002 0.005 0.013 8 D 0.013 0.167 0.124 0.063 0.001 0.027 0.006 0.002 0.015 0.001 0.014 0.346 0.165 0.004 0.007 0.044 9 M 0.020 0.010 0.410 0.164 0.001 0.008 0.005 0.001 0.001 0.001 0.018 0.012 0.318 0.001 0.005 0.027 10 T 0.001 0.001 0.013 0.005 0.001 0.813 0.001 0.001 0.001 0.001 0.004 0.019 0.141 0.001 0.001 0.001 11 F 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.903 0.007 0.083 0.001 0.001 0.001 12 A 0.001 0.010 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.768 0.214 0.001 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 14 A 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.002 15 L 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.001 16 Q 0.001 0.001 0.003 0.004 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.956 0.007 0.001 0.021 17 T 0.012 0.011 0.025 0.013 0.001 0.003 0.011 0.001 0.001 0.001 0.007 0.003 0.783 0.012 0.033 0.086 18 H 0.002 0.002 0.041 0.003 0.009 0.070 0.204 0.001 0.001 0.002 0.004 0.008 0.545 0.089 0.007 0.012 19 P 0.011 0.016 0.019 0.005 0.001 0.013 0.005 0.057 0.001 0.001 0.260 0.008 0.502 0.006 0.090 0.007 20 G 0.001 0.008 0.002 0.004 0.001 0.026 0.001 0.002 0.014 0.012 0.059 0.627 0.222 0.002 0.004 0.016 21 V 0.010 0.003 0.006 0.002 0.001 0.005 0.003 0.001 0.001 0.001 0.075 0.075 0.812 0.002 0.001 0.004 22 A 0.001 0.003 0.013 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.018 0.108 0.847 0.001 0.002 0.001 23 G 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.014 0.975 0.001 0.001 0.002 24 V 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 25 L 0.001 0.001 0.002 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.988 0.001 0.001 0.001 26 R 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.002 27 S 0.001 0.001 0.001 0.001 0.006 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.080 0.884 0.001 0.002 28 Y 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.044 0.002 0.930 0.002 29 N 0.002 0.004 0.008 0.002 0.010 0.002 0.036 0.001 0.028 0.065 0.003 0.009 0.073 0.240 0.005 0.513 30 L 0.690 0.003 0.023 0.006 0.001 0.002 0.011 0.024 0.001 0.001 0.010 0.002 0.056 0.009 0.156 0.006 31 G 0.006 0.074 0.301 0.025 0.005 0.042 0.024 0.008 0.042 0.035 0.011 0.020 0.106 0.004 0.021 0.277 32 C 0.123 0.017 0.036 0.048 0.251 0.083 0.127 0.008 0.004 0.013 0.067 0.022 0.063 0.122 0.003 0.012 33 I 0.014 0.104 0.131 0.101 0.020 0.023 0.023 0.257 0.006 0.003 0.074 0.041 0.041 0.005 0.151 0.004 34 G 0.011 0.063 0.059 0.159 0.007 0.036 0.018 0.010 0.126 0.130 0.018 0.045 0.072 0.002 0.007 0.237 35 C 0.312 0.011 0.065 0.047 0.050 0.155 0.030 0.009 0.008 0.015 0.073 0.060 0.129 0.020 0.004 0.011 36 M 0.017 0.101 0.082 0.054 0.009 0.042 0.008 0.056 0.003 0.004 0.368 0.106 0.105 0.006 0.035 0.006 37 G 0.010 0.095 0.030 0.080 0.008 0.052 0.006 0.010 0.035 0.022 0.036 0.398 0.159 0.003 0.009 0.047 38 A 0.043 0.009 0.090 0.041 0.025 0.062 0.059 0.004 0.003 0.005 0.106 0.071 0.428 0.026 0.006 0.022 39 Q 0.011 0.066 0.066 0.031 0.001 0.063 0.006 0.037 0.002 0.002 0.091 0.106 0.461 0.001 0.039 0.015 40 N 0.008 0.042 0.042 0.041 0.003 0.051 0.009 0.001 0.024 0.011 0.079 0.137 0.473 0.004 0.002 0.073 41 E 0.034 0.027 0.123 0.053 0.001 0.011 0.003 0.002 0.001 0.001 0.053 0.101 0.578 0.001 0.003 0.011 42 S 0.001 0.002 0.006 0.003 0.001 0.349 0.001 0.001 0.001 0.001 0.010 0.059 0.565 0.001 0.001 0.002 43 L 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.624 0.013 0.357 0.001 0.001 0.001 44 E 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.517 0.471 0.003 0.001 0.001 45 Q 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.988 0.001 0.003 0.003 46 G 0.001 0.001 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.003 0.962 0.003 0.001 0.024 47 A 0.003 0.001 0.008 0.002 0.001 0.001 0.007 0.001 0.001 0.001 0.002 0.001 0.965 0.004 0.003 0.003 48 N 0.001 0.007 0.012 0.003 0.004 0.008 0.005 0.001 0.001 0.001 0.003 0.012 0.880 0.021 0.010 0.030 49 A 0.001 0.001 0.001 0.001 0.014 0.001 0.030 0.001 0.001 0.001 0.002 0.001 0.009 0.939 0.001 0.001 50 H 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.011 0.001 0.948 0.003 51 G 0.002 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.019 0.005 0.001 0.001 0.003 0.001 0.001 0.957 52 L 0.753 0.004 0.213 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 53 N 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 56 D 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.967 0.001 0.001 0.009 57 I 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.002 58 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.009 0.984 0.002 0.001 0.001 59 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 60 D 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.003 0.946 0.007 0.001 0.035 61 L 0.002 0.001 0.023 0.002 0.001 0.001 0.013 0.001 0.001 0.001 0.002 0.002 0.919 0.015 0.011 0.008 62 N 0.001 0.002 0.014 0.003 0.001 0.011 0.011 0.001 0.001 0.001 0.002 0.004 0.926 0.011 0.006 0.008 63 A 0.005 0.019 0.007 0.008 0.001 0.008 0.008 0.003 0.001 0.001 0.044 0.010 0.802 0.024 0.015 0.044 64 L 0.009 0.023 0.032 0.014 0.010 0.015 0.091 0.003 0.004 0.002 0.025 0.085 0.376 0.226 0.033 0.052 65 A 0.011 0.018 0.110 0.019 0.005 0.012 0.100 0.012 0.002 0.001 0.026 0.013 0.445 0.035 0.156 0.035