# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1297	a.248.1.1	133507
1e0gA	48	5.541	d.7.1.1	37325
1txgA	335	9.920	a.100.1.6,c.2.1.6	112775,112776
1w7jA	795	11.26	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	14.24		
2akaA	776	14.79		
1w9iA	770	17.06		
1fe0A	68	19.52	d.58.17.1	39345
1dlwA	116	21.79	a.1.1.1	14982
2imfA	203	24.63		
1y6uA	70	25.31		
1mvwA	840	28.47	i.15.1.1	79523
1ui8A	638	31.13	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1cc8A	73	36.12	d.58.17.1	39343
2aorA	223	38.62		
2gu1A	361	41.71		
2ezkA	99	43.64	a.4.1.2	16027
1pczA	191	47.23	d.129.1.1,d.129.1.1	41292,41293
1br2A	791	48.12	b.34.3.1,c.37.1.9	24558,32155
2v26A	784	48.37		
1u55A	188	51.01	d.278.1.1	107677
1etxA	98	55.38	a.4.1.12	18978
1wdvA	152	55.63	d.116.1.1	114539
1yzxA	226	55.75		
2z2mA	168	56.02		
1qupA	222	56.07	b.1.8.1,d.58.17.1	22301,39352
2phcB	225	56.20		
1z67A	135	57.04	a.259.1.1	124507
2vl6A	268	58.75		
1ksiB	642	61.52	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1lvk	762	61.69		
2ofyA	86	62.21		
1d0yA	761	63.17	b.34.3.1,c.37.1.9	24581,32178
1e3dA	266	67.63	e.19.1.1	59188
1sw2A	275	70.12	c.94.1.1	106064
2eqpA	50	70.28		
1a4fA	141	71.32	a.1.1.2	15394
2h26A	291	73.07	b.1.1.2,d.19.1.1	135990,135991
1lmb3	92	77.36		
2ewtA	71	77.44		
1lliA	92	77.93	a.35.1.2	17025
1dbxA	158	78.05	d.116.1.1	40928
1y0pA	571	78.69	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1l0oC	243	80.02	a.4.13.2	73405
2oa4A	101	84.59		
2j01U	118	90.00