# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03183	a.248.1.1	133507
1e0gA	48	2.305	d.7.1.1	37325
2imfA	203	5.554		
2akaA	776	7.547		
1w9iA	770	7.919		
1w7jA	795	10.43	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	11.26		
1dlwA	116	13.76	a.1.1.1	14982
1txgA	335	13.88	a.100.1.6,c.2.1.6	112775,112776
2aorA	223	17.71		
1y0pA	571	18.63	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1yzxA	226	19.74		
1mvwA	840	20.20	i.15.1.1	79523
1u55A	188	24.70	d.278.1.1	107677
1ui8A	638	25.34	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1d0yA	761	26.09	b.34.3.1,c.37.1.9	24581,32178
1lvk	762	27.01		
1wdvA	152	28.90	d.116.1.1	114539
2z2mA	168	29.00		
2v26A	784	29.73		
1y6uA	70	29.86		
1ksiB	642	30.99	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
2gu1A	361	32.68		
1pczA	191	33.16	d.129.1.1,d.129.1.1	41292,41293
2ewtA	71	34.98		
2j01U	118	36.33		
2phcB	225	36.71		
1br2A	791	37.97	b.34.3.1,c.37.1.9	24558,32155
1dbxA	158	41.29	d.116.1.1	40928
1lmb3	92	41.52		
1lliA	92	42.41	a.35.1.2	17025
2ofyA	86	42.85		
2ghjA	118	42.95		
1qo8A	566	46.81	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1etxA	98	46.95	a.4.1.12	18978
1frvA	264	49.56	e.19.1.1	43308
1z67A	135	49.98	a.259.1.1	124507
1e3dA	266	52.75	e.19.1.1	59188
1u3eM	174	53.07	d.4.1.3,d.285.1.1	107640,107641
2vl6A	268	56.15		
1ubkS	267	57.05	e.19.1.1	88423
2nsaA	170	57.56		
1ntcA	91	64.64	a.4.1.12	19004
2al3A	90	66.07	d.15.1.2	126957
2pgdA	482	67.10	a.100.1.1,c.2.1.6	18778,30190
1lkxA	697	67.40	c.37.1.9	73981
1azo	232	68.96		
2i57A	438	70.80		
1xrsA	516	71.15	c.1.19.4	115883
1k6kA	143	71.19	a.174.1.1	77274
1wi9A	72	72.43	a.4.5.47	114663
2rn7A	108	75.22		
1fe0A	68	75.36	d.58.17.1	39345
1b0nA	111	80.40	a.34.1.1,a.35.1.3	17001,17064
1sw2A	275	82.44	c.94.1.1	106064
2bnmA	198	82.60	a.35.1.3,b.82.1.10	128835,128836
3cjsB	72	83.50		
1tc3C	51	84.78	a.4.1.2	16025
1l0oC	243	85.40	a.4.13.2	73405
3c6fA	153	86.25		
1lccA	51	88.23	a.35.1.5	17110
2cobA	70	89.07	a.4.1.15	130673
1umqA	81	89.31	a.4.1.12	99625
1q9jA	422	89.74	c.43.1.2,c.43.1.2	104590,104591