# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2567	a.248.1.1	133507
1txgA	335	8.206	a.100.1.6,c.2.1.6	112775,112776
1fe0A	68	12.54	d.58.17.1	39345
2akaA	776	13.46		
1e0gA	48	13.95	d.7.1.1	37325
1cc8A	73	15.22	d.58.17.1	39343
1w7jA	795	18.03	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	18.44		
2bkhA	814	20.81		
2aorA	223	27.39		
2ezkA	99	32.66	a.4.1.2	16027
1ui8A	638	34.02	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1y6uA	70	37.13		
1dlwA	116	40.79	a.1.1.1	14982
1qupA	222	41.54	b.1.8.1,d.58.17.1	22301,39352
2imfA	203	44.89		
1z67A	135	46.39	a.259.1.1	124507
1u55A	188	49.60	d.278.1.1	107677
2au3A	407	51.13		
1e3dA	266	53.01	e.19.1.1	59188
1etxA	98	54.27	a.4.1.12	18978
1lvk	762	56.27		
1d0yA	761	57.50	b.34.3.1,c.37.1.9	24581,32178
1mvwA	840	59.29	i.15.1.1	79523
1pczA	191	59.44	d.129.1.1,d.129.1.1	41292,41293
1br2A	791	61.40	b.34.3.1,c.37.1.9	24558,32155
1yzxA	226	61.43		
2gu1A	361	63.28		
2v26A	784	64.48		
2eqpA	50	65.92		
2b5aA	77	66.26	a.35.1.3	127882
2z2mA	168	67.31		
1ksiB	642	69.52	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
2ofyA	86	70.96		
1z4vA	532	72.35		
2qnuA	226	74.90		
1ubkS	267	75.47	e.19.1.1	88423
1mwyA	73	77.95	d.58.17.1	79616
2phcB	225	78.66		
1jpyA	137	78.77	g.17.1.6	67065
2ezhA	75	83.95	a.4.1.2	16029
1lliA	92	89.70	a.35.1.2	17025