# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2877	a.248.1.1	133507
1txgA	335	10.33	a.100.1.6,c.2.1.6	112775,112776
1fe0A	68	12.38	d.58.17.1	39345
2akaA	776	12.59		
1e0gA	48	15.01	d.7.1.1	37325
1cc8A	73	15.93	d.58.17.1	39343
1w7jA	795	17.14	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	17.65		
1w9iA	770	17.80		
2aorA	223	22.97		
2ezkA	99	40.11	a.4.1.2	16027
1dlwA	116	40.14	a.1.1.1	14982
1y6uA	70	41.10		
1qupA	222	41.99	b.1.8.1,d.58.17.1	22301,39352
1z67A	135	43.84	a.259.1.1	124507
1ui8A	638	48.28	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1lvk	762	48.46		
1d0yA	761	49.26	b.34.3.1,c.37.1.9	24581,32178
1etxA	98	52.21	a.4.1.12	18978
1mvwA	840	52.55	i.15.1.1	79523
1e3dA	266	53.08	e.19.1.1	59188
2v26A	784	54.83		
2imfA	203	55.83		
1br2A	791	59.60	b.34.3.1,c.37.1.9	24558,32155
1yzxA	226	62.46		
2qnuA	226	63.82		
1u55A	188	64.02	d.278.1.1	107677
1z4vA	532	69.32		
1pczA	191	69.50	d.129.1.1,d.129.1.1	41292,41293
1lliA	92	70.46	a.35.1.2	17025
2eqpA	50	72.97		
2ezhA	75	73.12	a.4.1.2	16029
2au3A	407	73.29		
1ubkS	267	75.96	e.19.1.1	88423
2ofyA	86	76.76		
1mwyA	73	78.64	d.58.17.1	79616
2b5aA	77	79.03	a.35.1.3	127882
1gyzA	60	80.45	a.144.2.1	70793
2gu1A	361	81.43		
2fzpA	144	84.23		
2z2mA	168	84.61		
1ksiB	642	86.23	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1dbxA	158	87.87	d.116.1.1	40928
2gwfB	134	89.02		
2phcB	225	89.27