# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2424	a.248.1.1	133507
1fe0A	68	8.879	d.58.17.1	39345
1txgA	335	11.54	a.100.1.6,c.2.1.6	112775,112776
2akaA	776	11.88		
1cc8A	73	12.34	d.58.17.1	39343
1e0gA	48	12.76	d.7.1.1	37325
1w9iA	770	16.24		
1w7jA	795	17.95	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	18.32		
2aorA	223	23.43		
1y6uA	70	28.73		
1qupA	222	30.17	b.1.8.1,d.58.17.1	22301,39352
2ezkA	99	37.12	a.4.1.2	16027
1dlwA	116	38.37	a.1.1.1	14982
1ui8A	638	40.00	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1mvwA	840	49.71	i.15.1.1	79523
1lvk	762	49.93		
1d0yA	761	51.05	b.34.3.1,c.37.1.9	24581,32178
1z67A	135	54.44	a.259.1.1	124507
1u55A	188	55.65	d.278.1.1	107677
2imfA	203	55.85		
1br2A	791	58.65	b.34.3.1,c.37.1.9	24558,32155
2qnuA	226	58.98		
1e3dA	266	59.87	e.19.1.1	59188
2v26A	784	63.09		
1mwyA	73	63.15	d.58.17.1	79616
1z4vA	532	64.57		
2z2mA	168	65.00		
2eqpA	50	66.23		
1etxA	98	67.53	a.4.1.12	18978
2au3A	407	67.78		
2ofyA	86	68.00		
2gu1A	361	77.33		
1yzxA	226	77.62		
1ksiB	642	77.78	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
2phcB	225	80.80		
1azo	232	81.03		
1ubkS	267	81.68	e.19.1.1	88423
1pczA	191	83.26	d.129.1.1,d.129.1.1	41292,41293
2ezhA	75	83.64	a.4.1.2	16029
1lliA	92	84.95	a.35.1.2	17025
2b5aA	77	88.59	a.35.1.3	127882