# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1024	a.248.1.1	133507
1e0gA	48	6.979	d.7.1.1	37325
1w7jA	795	11.18	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	14.43		
2akaA	776	14.77		
1fe0A	68	16.02	d.58.17.1	39345
2bkhA	814	16.37		
2j01U	118	29.11		
1mvwA	840	35.41	i.15.1.1	79523
2imfA	203	35.83		
1etxA	98	40.61	a.4.1.12	18978
1y6uA	70	44.46		
2ofyA	86	50.65		
2v26A	784	51.49		
1d0yA	761	54.99	b.34.3.1,c.37.1.9	24581,32178
2ewtA	71	56.01		
2phcB	225	58.00		
1k6kA	143	61.50	a.174.1.1	77274
2z2mA	168	66.94		
1dlwA	116	68.16	a.1.1.1	14982
1lvk	762	69.55		
1huxA	270	69.94	c.55.1.5	61278
2qnuA	226	70.72		
1br2A	791	70.94	b.34.3.1,c.37.1.9	24558,32155
1ogiA	303	73.88	b.43.4.2,c.25.1.1	92914,92915
1ksiB	642	75.46	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1yaaA	412	76.74	c.67.1.1	34280
2ezkA	99	76.87	a.4.1.2	16027
1qupA	222	78.88	b.1.8.1,d.58.17.1	22301,39352
1hdsA	141	82.56	a.1.1.2	15378
3bs3A	76	84.01		
1txgA	335	85.10	a.100.1.6,c.2.1.6	112775,112776
1gyzA	60	87.48	a.144.2.1	70793
1cc8A	73	87.72	d.58.17.1	39343