# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2607	a.248.1.1	133507
1txgA	335	9.492	a.100.1.6,c.2.1.6	112775,112776
2akaA	776	10.91		
2bkhA	814	12.00		
1w9iA	770	13.43		
1w7jA	795	15.12	b.34.3.1,c.37.1.9	120688,120689
1e0gA	48	20.38	d.7.1.1	37325
2imfA	203	29.36		
1fe0A	68	29.45	d.58.17.1	39345
2aorA	223	31.83		
2v26A	784	32.25		
1dlwA	116	34.92	a.1.1.1	14982
1mvwA	840	40.33	i.15.1.1	79523
1lvk	762	45.18		
1ui8A	638	46.31	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1br2A	791	46.82	b.34.3.1,c.37.1.9	24558,32155
2ofyA	86	46.85		
2ewtA	71	49.05		
1d0yA	761	51.94	b.34.3.1,c.37.1.9	24581,32178
1pczA	191	52.54	d.129.1.1,d.129.1.1	41292,41293
1yzxA	226	56.80		
1u55A	188	61.24	d.278.1.1	107677
1y6uA	70	61.28		
1wdvA	152	63.52	d.116.1.1	114539
1lmb3	92	68.06		
1z67A	135	70.69	a.259.1.1	124507
1lliA	92	76.28	a.35.1.2	17025
1qupA	222	79.70	b.1.8.1,d.58.17.1	22301,39352
1tc3C	51	81.18	a.4.1.2	16025
1y0pA	571	83.11	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2z2mA	168	87.16		
1k6kA	143	87.39	a.174.1.1	77274
2au3A	407	87.74		
1etxA	98	87.93	a.4.1.12	18978
2ezkA	99	87.97	a.4.1.2	16027