# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.004730 a.248.1.1 133507 1e0gA 48 1.705 d.7.1.1 37325 1qhoA 686 1.873 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1peqA 714 2.266 a.98.1.1,c.7.1.2 104131,104132 2rfmA 192 5.788 2vdjA 301 5.920 2jabA 136 7.588 1aokA 122 7.882 a.133.1.2 19560 1jf8A 131 8.147 c.44.1.1 66621 1yxhA 126 8.426 1ympA 135 8.740 1bifA 469 9.324 c.37.1.7,c.60.1.4 31961,34003 1aokB 122 10.23 a.133.1.2 19561 3c0bA 334 10.29 1y75A 118 10.82 1fe0A 68 10.92 d.58.17.1 39345 2btoA 473 10.95 2veqA 565 10.99 1yzxA 226 11.32 1u55A 188 11.61 d.278.1.1 107677 1jltB 122 13.21 a.133.1.2 66868 1jc4A 148 14.49 d.32.1.4 62863 1yaaA 412 14.88 c.67.1.1 34280 1jwhA 337 15.35 d.144.1.7 71913 1sddA 306 16.20 b.6.1.3,b.6.1.3 105431,105432 1mc2A 122 16.80 a.133.1.2 74622 1a2aA 122 17.95 a.133.1.2 19540 1etxA 98 18.80 a.4.1.12 18978 2hbvA 334 18.84 c.1.9.15 136320 1s6bA 119 19.39 a.133.1.2 98592 1fcdA 401 19.68 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1xxsA 122 19.98 1dlwA 116 20.71 a.1.1.1 14982 1cf2O 337 21.27 c.2.1.3,d.81.1.1 29994,39909 2iw2A 494 22.45 1q48A 134 22.86 d.224.1.2 95783 1yxlA 119 24.67 a.133.1.2 124191 1sw2A 275 24.90 c.94.1.1 106064 1ayfA 105 24.95 d.15.4.1 37684 2pajA 492 25.20 2pq6A 482 25.35 1zxmA 400 25.58 2pgfA 371 26.21 1o4yA 288 26.39 b.29.1.2 92473 2d74B 148 26.94 2e84A 556 27.68 1m6bA 621 28.96 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 74521,74522,74523,74524 1s8iA 121 29.04 a.133.1.2 98735 2imfA 203 29.06 1rlrA 761 29.34 a.98.1.1,c.7.1.2 18753,30679 1xrsA 516 29.83 c.1.19.4 115883 2p71A 132 32.07 a.39.2.1 139516 1g4iA 123 32.39 a.133.1.2 60241 1s6bB 119 34.75 a.133.1.2 98593 1ox6A 555 34.91 c.1.2.1,c.23.16.1 87505,87506 1ae7A 119 35.63 a.133.1.2 19553 1d3uA 181 36.11 d.129.1.1,d.129.1.1 41290,41291 1p2fA 220 37.21 a.4.6.1,c.23.1.1 87720,87721 1bif 469 37.39 1vm8A 534 37.75 c.68.1.5 113670 1zunB 434 38.57 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1huxA 270 39.08 c.55.1.5 61278 2ofyA 86 39.19 2viuB 175 39.47 h.3.1.1 45676 2goyA 275 41.97 3c5rA 137 42.41 1kvoA 124 43.17 a.133.1.2 19564 2zfoB 142 43.18 1ypyA 184 43.52 1wdvA 152 45.13 d.116.1.1 114539 1z67A 135 46.10 a.259.1.1 124507 1w9iA 770 47.03 2o2xA 218 47.49 1hgeB 175 47.80 h.3.1.1 45680 1y6uA 70 47.87 2vgeA 229 48.79 1txgA 335 50.31 a.100.1.6,c.2.1.6 112775,112776 2ewtA 71 52.17 2eqpA 50 53.90 1y4lA 121 55.26 a.133.1.2 122624 1rroA 108 56.91 a.39.1.4 17195 1vjrA 271 56.98 c.108.1.14 100832 1y75B 118 58.11 2a74A 643 59.77 1qycA 308 60.14 c.2.1.2 96581 2e1zA 415 61.07 2q4fA 149 61.11 a.24.10.2 139847 1lliA 92 62.46 a.35.1.2 17025 1pczA 191 62.48 d.129.1.1,d.129.1.1 41292,41293 1wlzA 105 62.56 a.39.1.7 121024 1c30B 382 64.18 c.8.3.1,c.23.16.1 30736,31413 1w7jA 795 64.36 b.34.3.1,c.37.1.9 120688,120689 1u3eM 174 65.46 d.4.1.3,d.285.1.1 107640,107641 1lmb3 92 65.77 2cvzA 289 65.83 a.100.1.1,c.2.1.6 130890,130891 2qezA 455 66.67 3bq5A 766 66.96 2jdxA 385 67.54 d.126.1.2 41139 1l5aA 436 69.08 c.43.1.2,c.43.1.2 75923,75924 1n0qA 93 72.15 k.37.1.1 79754 1khyA 148 74.39 a.174.1.1 77410 1mb3A 124 74.43 c.23.1.1 78907 1oqsB 122 74.83 a.133.1.2 93428 2akaA 776 75.63 1zzmA 259 76.33 c.1.9.12 125911 1dghB 498 76.81 e.5.1.1 42791 1b7gO 340 77.83 c.2.1.3,d.81.1.1 29992,39907 2ovsA 118 78.10 1a2xA 159 79.01 a.39.1.5 17251 1xl4A 301 79.37 b.1.18.16,f.14.1.1 115430,115431 1lccA 51 81.42 a.35.1.5 17110 1bunA 120 83.16 a.133.1.2 19614 2csbA 519 83.35 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1cc8A 73 83.49 d.58.17.1 39343 2aqpA 164 84.87 2pnwA 380 85.21 1sg1X 161 87.68 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 2vl6A 268 89.02