# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.2184	a.248.1.1	133507
1e0gA	48	6.824	d.7.1.1	37325
1w7jA	795	12.69	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	16.06		
2bkhA	814	16.09		
1txgA	335	16.12	a.100.1.6,c.2.1.6	112775,112776
1w9iA	770	16.17		
1fe0A	68	17.57	d.58.17.1	39345
1dlwA	116	20.55	a.1.1.1	14982
2imfA	203	21.14		
2aorA	223	26.02		
1mvwA	840	32.33	i.15.1.1	79523
1pczA	191	43.57	d.129.1.1,d.129.1.1	41292,41293
2fzpA	144	44.96		
1ksiB	642	46.30	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1cc8A	73	47.20	d.58.17.1	39343
1br2A	791	48.58	b.34.3.1,c.37.1.9	24558,32155
1u55A	188	50.08	d.278.1.1	107677
1y6uA	70	50.28		
1ui8A	638	50.85	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
2ogbA	126	51.42		
2v26A	784	53.12		
2z2mA	168	55.96		
2eqpA	50	58.48		
1qupA	222	60.05	b.1.8.1,d.58.17.1	22301,39352
1lvk	762	61.39		
1d0yA	761	63.38	b.34.3.1,c.37.1.9	24581,32178
2gwfB	134	66.82		
1e3dA	266	69.15	e.19.1.1	59188
1frvA	264	69.92	e.19.1.1	43308
1yzxA	226	72.77		
2h26A	291	74.87	b.1.1.2,d.19.1.1	135990,135991
1mwyA	73	76.21	d.58.17.1	79616
1sw2A	275	79.91	c.94.1.1	106064
2phcB	225	80.93		
1z4vA	532	82.92		
2j01U	118	85.43		
1hdsA	141	89.89	a.1.1.2	15378