# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1101	a.248.1.1	133507
1e0gA	48	5.973	d.7.1.1	37325
1fe0A	68	8.143	d.58.17.1	39345
1txgA	335	10.48	a.100.1.6,c.2.1.6	112775,112776
2akaA	776	10.86		
2bkhA	814	10.95		
1w7jA	795	11.56	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	11.60		
2aorA	223	18.04		
1dlwA	116	19.46	a.1.1.1	14982
1cc8A	73	19.50	d.58.17.1	39343
1mvwA	840	20.26	i.15.1.1	79523
1qupA	222	25.70	b.1.8.1,d.58.17.1	22301,39352
1y6uA	70	26.33		
2imfA	203	26.87		
1pczA	191	35.58	d.129.1.1,d.129.1.1	41292,41293
1u55A	188	36.15	d.278.1.1	107677
2v26A	784	36.42		
1ksiB	642	37.77	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
2eqpA	50	40.62		
1br2A	791	41.21	b.34.3.1,c.37.1.9	24558,32155
1ui8A	638	41.76	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1e3dA	266	46.69	e.19.1.1	59188
1d0yA	761	47.61	b.34.3.1,c.37.1.9	24581,32178
1yzxA	226	48.54		
1ubkS	267	50.14	e.19.1.1	88423
1lvk	762	51.62		
2z2mA	168	52.50		
2ezkA	99	53.57	a.4.1.2	16027
2ewtA	71	53.79		
2phcB	225	56.73		
2j01U	118	57.57		
1frvA	264	60.93	e.19.1.1	43308
2gu1A	361	61.96		
1babA	143	64.86	a.1.1.2	15235
2h26A	291	66.66	b.1.1.2,d.19.1.1	135990,135991
1dbxA	158	66.75	d.116.1.1	40928
1gyzA	60	67.29	a.144.2.1	70793
1y0pA	571	67.66	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1wdvA	152	70.42	d.116.1.1	114539
1b25A	619	71.59	a.110.1.1,d.152.1.1	19044,41796
1sw2A	275	71.73	c.94.1.1	106064
1mwyA	73	72.29	d.58.17.1	79616
2fzpA	144	73.10		
1h2aS	317	74.87	e.19.1.1	43311
1hdsA	141	75.79	a.1.1.2	15378
1z67A	135	79.64	a.259.1.1	124507
1etxA	98	80.50	a.4.1.12	18978
2ogbA	126	81.31		
2agaA	190	85.08		
2au3A	407	86.19