# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.6373	a.248.1.1	133507
1fe0A	68	27.81	d.58.17.1	39345
1txgA	335	27.94	a.100.1.6,c.2.1.6	112775,112776
1w7jA	795	43.37	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	44.89		
1lliA	92	45.87	a.35.1.2	17025
1lmb3	92	47.75		
1w9iA	770	48.43		
2agaA	190	57.56		
1aokB	122	61.67	a.133.1.2	19561
2fzpA	144	63.64		
1yzbA	182	65.21		
1qupA	222	67.51	b.1.8.1,d.58.17.1	22301,39352
1j6oA	268	67.62	c.1.9.12	77088
1z4vA	532	68.93		
1huxA	270	69.05	c.55.1.5	61278
1e0gA	48	69.76	d.7.1.1	37325
1y75A	118	70.66		
1cc8A	73	77.21	d.58.17.1	39343
1aokA	122	82.85	a.133.1.2	19560
2bkhA	814	86.41		
2ogbA	126	88.53