# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.6855	a.248.1.1	133507
1e0gA	48	29.00	d.7.1.1	37325
1w7jA	795	31.87	b.34.3.1,c.37.1.9	120688,120689
1txgA	335	34.29	a.100.1.6,c.2.1.6	112775,112776
1lliA	92	38.80	a.35.1.2	17025
1aokB	122	39.98	a.133.1.2	19561
1mvwA	840	46.41	i.15.1.1	79523
2imfA	203	47.15		
1w9iA	770	47.85		
1lmb3	92	51.95		
2akaA	776	53.75		
1ypyA	184	56.37		
1fe0A	68	64.51	d.58.17.1	39345
1ui8A	638	72.79	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1z4vA	532	75.48		
1aokA	122	81.99	a.133.1.2	19560
2bkhA	814	82.28		
2eqpA	50	84.48