# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000120 a.248.1.1 133507 1jb9A 316 0.5574 b.43.4.2,c.25.1.1 62840,62841 2dklA 85 2.320 a.5.2.1 131555 2qnuA 226 2.742 1qg0A 308 2.893 b.43.4.2,c.25.1.1 25639,31529 1qh0A 295 3.427 b.43.4.2,c.25.1.1 68891,68892 2ooaA 52 3.456 1ogiA 303 3.966 b.43.4.2,c.25.1.1 92914,92915 1b2rA 304 4.420 b.43.4.2,c.25.1.1 25648,31538 1fndA 314 4.775 b.43.4.2,c.25.1.1 25626,31516 2b5oA 402 5.240 1bx1A 314 5.355 b.43.4.2,c.25.1.1 25629,31519 1etxA 98 7.493 a.4.1.12 18978 1fnc 314 8.062 3bnjA 485 8.090 1go2A 304 8.092 b.43.4.2,c.25.1.1 76243,76244 1k6kA 143 9.274 a.174.1.1 77274 1vejA 74 9.425 a.5.2.1 120020 2j01U 118 11.62 2imfA 203 11.83 1yrvA 169 12.03 d.20.1.1 123941 1fs7A 485 12.45 a.138.1.3 19691 3c9pA 123 13.75 1x24A 180 13.89 1dxsA 80 14.69 a.60.1.2 17944 2i57A 438 15.00 1vekA 84 15.43 a.5.2.1 113636 2eggA 297 16.24 2bsaA 303 16.25 b.43.4.2,c.25.1.1 129078,129079 2ofyA 86 16.84 2bkhA 814 17.41 2ew2A 316 18.67 1e0gA 48 19.28 d.7.1.1 37325 1qdbA 473 21.05 a.138.1.3 19688 1fipA 98 21.59 a.4.1.12 18980 1sqiA 393 21.80 d.32.1.3,d.32.1.3 105914,105915 1zckA 154 22.00 1u9lA 70 24.32 a.60.4.2 107751 1w9iA 770 24.80 2cp8A 54 24.84 a.5.2.1 130695 1j9aA 184 25.14 c.55.3.5 84135 2h7bA 105 26.21 2jabA 136 26.92 1jihA 531 29.00 d.240.1.1,e.8.1.7 90374,90375 2h56A 233 29.52 2in3A 216 30.73 2rfmA 192 31.27 2r7aA 256 31.78 1z96A 40 32.84 1zarA 282 33.39 a.4.5.56,d.144.1.9 124843,124844 1w7jA 795 33.61 b.34.3.1,c.37.1.9 120688,120689 2j16A 182 33.71 2bwbA 46 34.27 a.5.2.1 129329 1w34A 304 34.56 b.43.4.2,c.25.1.1 120620,120621 2qhoB 53 34.87 2ezhA 75 35.93 a.4.1.2 16029 2pr7A 137 36.06 1pscA 365 36.09 c.1.9.3 29058 1rxdA 159 36.33 c.45.1.1 111959 1e8cA 498 37.76 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1ixsA 62 38.51 a.5.1.1 76932 1t1dA 100 39.38 d.42.1.2 38637 1zelA 298 39.60 1l0oC 243 42.59 a.4.13.2 73405 1cjxA 357 44.22 d.32.1.3,d.32.1.3 38516,38517 1i74A 309 44.40 c.107.1.1 61867 1qo8A 566 44.56 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2yx6A 121 45.45 2v26A 784 46.27 1xzoA 174 46.54 c.47.1.10 122474 1s5uA 138 46.55 d.38.1.1 98573 1u4gA 301 46.62 d.92.1.2 107670 1h7eA 245 46.81 c.68.1.13 60717 1pbjA 125 46.87 d.37.1.1,d.37.1.1 94414,94415 1wr1B 58 48.77 a.5.2.1 121185 1z54A 132 48.94 d.38.1.1 124450 1p90A 145 50.03 c.55.5.2 94377 1ig0A 319 50.33 b.82.6.1,c.100.1.1 62354,62355 1ig3A 263 50.44 b.82.6.1,c.100.1.1 62358,62359 1hqvA 191 51.11 a.39.1.8 61160 1cvrA 435 51.39 b.1.18.12,c.17.1.2 21949,31006 1wi9A 72 51.90 a.4.5.47 114663 2dgdA 223 52.24 1tueA 212 53.80 c.37.1.20 107323 1ifyA 49 53.83 a.5.2.1 71207 2ezkA 99 54.58 a.4.1.2 16027 1ujcA 161 55.26 2g0wA 296 56.00 c.1.15.4 134503 2f46A 156 56.80 1m7sA 484 57.05 e.5.1.1 74574 1v38A 78 57.85 a.60.1.2 100280 1y6uA 70 58.42 2gu1A 361 60.92 1eywA 331 61.47 c.1.9.3 29057 1gx1A 160 61.61 d.79.5.1 70675 3c86A 328 62.99 1j6uA 469 63.55 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 2f3nA 76 63.69 a.60.1.2 132885 2nxnB 147 64.16 1b0xA 94 65.16 a.60.1.2 17933 2yw2A 424 65.47 1p4dA 330 65.76 d.89.1.5 94101 1mvwA 840 66.99 i.15.1.1 79523 1yzxA 226 67.17 1zclA 180 68.13 1l3lA 234 69.97 a.4.6.2,d.110.5.1 73541,73542 1ccwA 137 70.82 c.23.6.1 31238 1i0dA 332 71.19 c.1.9.3 61487 1vj0A 380 71.69 b.35.1.2,c.2.1.1 100786,100787 2cw6A 298 71.73 2if5A 120 72.80 1rz3A 201 73.31 c.37.1.6 98132 1a8oA 70 74.17 a.28.3.1 16953 2rdzA 452 76.25 1h2eA 207 77.96 c.60.1.1 70857 2d2jA 329 78.31 c.1.9.3 131175 1mv8A 436 78.54 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 4uagA 437 79.34 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1rd5A 262 79.72 c.1.2.4 111772 3b84A 119 80.56 1p77A 272 81.98 c.2.1.7,c.58.1.5 94214,94215 2gmwA 211 82.16 1r9kA 172 82.63 a.168.1.1 104869 2qezA 455 82.85 1n0qA 93 84.10 k.37.1.1 79754 1ja1A 622 84.67 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1zv1A 65 85.16 2cobA 70 86.76 a.4.1.15 130673 2o0mA 345 87.73 1wgnA 63 88.80 a.5.2.1 114617