# TARGET T0469 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0469.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.8853 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.115 0.043 0.180 0.305 0.010 0.106 0.030 0.006 0.011 0.011 0.030 0.034 0.083 0.005 0.005 0.028 2 T 0.037 0.175 0.279 0.367 0.002 0.035 0.005 0.009 0.005 0.001 0.015 0.018 0.031 0.001 0.007 0.012 3 Q 0.022 0.027 0.143 0.670 0.004 0.037 0.004 0.003 0.007 0.005 0.021 0.013 0.025 0.001 0.002 0.015 4 K 0.045 0.060 0.191 0.522 0.014 0.101 0.004 0.002 0.003 0.001 0.009 0.011 0.025 0.001 0.001 0.007 5 F 0.012 0.042 0.068 0.453 0.087 0.145 0.028 0.008 0.002 0.003 0.080 0.018 0.033 0.014 0.002 0.004 6 T 0.004 0.196 0.027 0.102 0.021 0.367 0.010 0.055 0.004 0.004 0.038 0.096 0.049 0.004 0.020 0.003 7 K 0.004 0.025 0.009 0.040 0.004 0.086 0.008 0.022 0.020 0.015 0.626 0.039 0.074 0.004 0.005 0.019 8 D 0.035 0.591 0.084 0.052 0.001 0.003 0.003 0.002 0.016 0.001 0.005 0.135 0.022 0.001 0.017 0.033 9 M 0.044 0.009 0.643 0.212 0.001 0.003 0.001 0.001 0.001 0.002 0.002 0.003 0.034 0.001 0.002 0.044 10 T 0.002 0.001 0.019 0.003 0.001 0.953 0.001 0.001 0.001 0.001 0.002 0.001 0.016 0.001 0.001 0.001 11 F 0.001 0.004 0.001 0.001 0.001 0.041 0.001 0.001 0.001 0.001 0.935 0.003 0.015 0.001 0.001 0.001 12 A 0.001 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.974 0.014 0.001 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.990 0.001 0.001 0.001 14 A 0.001 0.001 0.011 0.001 0.001 0.002 0.008 0.001 0.001 0.001 0.003 0.005 0.954 0.004 0.001 0.009 15 L 0.001 0.001 0.005 0.008 0.001 0.002 0.007 0.001 0.001 0.001 0.004 0.011 0.945 0.003 0.010 0.003 16 Q 0.001 0.004 0.016 0.008 0.001 0.006 0.017 0.001 0.001 0.001 0.002 0.002 0.782 0.042 0.005 0.111 17 T 0.023 0.067 0.146 0.090 0.001 0.003 0.009 0.004 0.001 0.001 0.004 0.005 0.419 0.010 0.073 0.144 18 H 0.006 0.002 0.098 0.005 0.012 0.280 0.109 0.001 0.001 0.006 0.006 0.008 0.426 0.015 0.003 0.023 19 P 0.006 0.029 0.010 0.003 0.001 0.024 0.001 0.011 0.001 0.001 0.662 0.011 0.234 0.001 0.005 0.002 20 G 0.001 0.027 0.002 0.006 0.001 0.009 0.001 0.001 0.010 0.002 0.024 0.826 0.086 0.001 0.001 0.005 21 V 0.009 0.003 0.016 0.005 0.001 0.007 0.007 0.001 0.001 0.001 0.035 0.057 0.854 0.001 0.002 0.002 22 A 0.001 0.003 0.027 0.006 0.001 0.015 0.002 0.001 0.001 0.001 0.028 0.058 0.855 0.001 0.003 0.001 23 G 0.001 0.004 0.002 0.016 0.001 0.005 0.001 0.001 0.001 0.001 0.014 0.026 0.931 0.001 0.001 0.002 24 V 0.001 0.003 0.001 0.020 0.001 0.010 0.002 0.001 0.001 0.001 0.002 0.039 0.919 0.001 0.001 0.002 25 L 0.001 0.003 0.015 0.027 0.001 0.005 0.005 0.001 0.001 0.001 0.003 0.006 0.927 0.003 0.002 0.003 26 R 0.001 0.006 0.007 0.019 0.001 0.008 0.002 0.001 0.001 0.001 0.003 0.005 0.942 0.001 0.003 0.004 27 S 0.001 0.001 0.002 0.008 0.030 0.003 0.042 0.001 0.001 0.001 0.004 0.001 0.107 0.787 0.001 0.011 28 Y 0.001 0.005 0.016 0.007 0.001 0.002 0.005 0.050 0.001 0.001 0.003 0.002 0.105 0.003 0.796 0.003 29 N 0.002 0.006 0.013 0.006 0.014 0.006 0.043 0.002 0.050 0.046 0.009 0.004 0.097 0.111 0.003 0.588 30 L 0.645 0.018 0.022 0.027 0.004 0.006 0.017 0.038 0.003 0.001 0.016 0.022 0.085 0.006 0.082 0.009 31 G 0.013 0.080 0.263 0.051 0.006 0.062 0.012 0.015 0.058 0.063 0.016 0.036 0.138 0.007 0.015 0.166 32 C 0.125 0.018 0.033 0.057 0.191 0.087 0.211 0.005 0.006 0.009 0.063 0.039 0.081 0.060 0.004 0.010 33 I 0.011 0.113 0.102 0.080 0.011 0.032 0.008 0.304 0.006 0.002 0.086 0.061 0.060 0.005 0.109 0.008 34 G 0.010 0.054 0.075 0.196 0.005 0.014 0.006 0.009 0.231 0.106 0.011 0.054 0.058 0.004 0.007 0.161 35 C 0.294 0.012 0.065 0.078 0.059 0.139 0.095 0.004 0.005 0.010 0.025 0.046 0.146 0.012 0.004 0.007 36 M 0.012 0.084 0.133 0.072 0.006 0.082 0.006 0.138 0.004 0.003 0.248 0.041 0.130 0.004 0.027 0.011 37 G 0.014 0.055 0.029 0.175 0.011 0.041 0.008 0.006 0.069 0.031 0.061 0.338 0.121 0.008 0.005 0.031 38 A 0.076 0.026 0.077 0.084 0.037 0.075 0.064 0.006 0.003 0.004 0.048 0.116 0.340 0.019 0.011 0.014 39 Q 0.007 0.044 0.077 0.051 0.002 0.096 0.005 0.061 0.003 0.004 0.133 0.083 0.370 0.002 0.041 0.021 40 N 0.015 0.051 0.026 0.045 0.002 0.077 0.006 0.002 0.024 0.011 0.085 0.146 0.454 0.003 0.003 0.050 41 E 0.071 0.065 0.085 0.104 0.001 0.010 0.002 0.003 0.001 0.001 0.050 0.144 0.448 0.001 0.006 0.008 42 S 0.001 0.001 0.006 0.004 0.001 0.425 0.001 0.001 0.001 0.001 0.006 0.055 0.499 0.001 0.001 0.002 43 L 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.353 0.014 0.616 0.001 0.001 0.001 44 E 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.577 0.407 0.001 0.001 0.001 45 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.993 0.001 0.001 0.001 46 G 0.001 0.001 0.004 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.002 0.980 0.001 0.001 0.007 47 A 0.001 0.001 0.002 0.002 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.002 0.983 0.001 0.001 0.002 48 N 0.001 0.003 0.005 0.005 0.002 0.005 0.006 0.001 0.001 0.001 0.003 0.006 0.943 0.014 0.002 0.008 49 A 0.001 0.001 0.001 0.001 0.006 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.005 0.966 0.001 0.001 50 H 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.003 0.001 0.972 0.001 51 G 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.030 0.006 0.001 0.001 0.003 0.001 0.001 0.955 52 L 0.970 0.003 0.018 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 N 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 56 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 57 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 58 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 59 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 60 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.932 0.049 0.001 0.017 61 L 0.001 0.001 0.003 0.001 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.950 0.016 0.019 0.003 62 N 0.001 0.001 0.003 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.948 0.010 0.009 0.022 63 A 0.010 0.002 0.008 0.001 0.001 0.001 0.023 0.001 0.001 0.001 0.002 0.003 0.483 0.265 0.015 0.184 64 L 0.007 0.005 0.097 0.001 0.005 0.005 0.320 0.001 0.001 0.001 0.005 0.004 0.330 0.101 0.090 0.027 65 A 0.007 0.040 0.156 0.008 0.006 0.015 0.108 0.044 0.001 0.002 0.027 0.010 0.250 0.049 0.179 0.099