# TARGET T0469 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0469.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 21.8853 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.080 0.028 0.007 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.106 0.015 0.119 0.630 2 T 0.025 0.026 0.004 0.001 0.004 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.003 0.094 0.008 0.069 0.749 3 Q 0.056 0.040 0.004 0.001 0.007 0.004 0.008 0.004 0.001 0.001 0.001 0.002 0.005 0.010 0.004 0.003 0.141 0.011 0.067 0.631 4 K 0.080 0.073 0.004 0.001 0.003 0.003 0.004 0.004 0.002 0.003 0.011 0.003 0.072 0.045 0.023 0.009 0.115 0.017 0.086 0.443 5 F 0.077 0.090 0.006 0.001 0.001 0.001 0.002 0.001 0.004 0.005 0.004 0.001 0.002 0.001 0.001 0.001 0.258 0.010 0.062 0.471 6 T 0.040 0.193 0.003 0.001 0.001 0.001 0.001 0.001 0.138 0.051 0.008 0.003 0.003 0.001 0.001 0.002 0.162 0.013 0.096 0.281 7 K 0.062 0.039 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.020 0.045 0.756 8 D 0.049 0.068 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.025 0.301 0.498 9 M 0.583 0.027 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.114 0.044 0.164 10 T 0.031 0.078 0.018 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.008 0.543 0.267 11 F 0.015 0.038 0.029 0.002 0.056 0.008 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.172 0.006 0.074 0.592 12 A 0.006 0.115 0.002 0.001 0.002 0.044 0.016 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.112 0.004 0.270 0.421 13 Q 0.048 0.159 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.009 0.254 0.502 14 A 0.038 0.806 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.011 0.126 15 L 0.035 0.876 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.003 0.013 0.049 16 Q 0.051 0.854 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.012 0.005 0.064 17 T 0.108 0.713 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.079 0.003 0.084 18 H 0.176 0.619 0.014 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.050 0.005 0.124 19 P 0.001 0.005 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.981 20 G 0.014 0.039 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.008 0.113 0.762 21 V 0.488 0.089 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.011 0.040 0.352 22 A 0.080 0.483 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.128 0.007 0.029 0.264 23 G 0.033 0.367 0.004 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.078 0.014 0.071 0.421 24 V 0.057 0.467 0.008 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.089 0.009 0.025 0.332 25 L 0.024 0.715 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.113 0.007 0.016 0.116 26 R 0.049 0.776 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.097 0.006 0.012 0.052 27 S 0.039 0.777 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.022 0.012 0.084 28 Y 0.170 0.572 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.129 0.008 0.082 29 N 0.328 0.183 0.019 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.050 0.150 0.052 0.211 30 L 0.054 0.047 0.436 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.017 0.071 0.336 31 G 0.076 0.035 0.023 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.295 0.035 0.173 0.348 32 C 0.137 0.028 0.035 0.006 0.003 0.002 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.012 0.108 0.595 33 I 0.060 0.032 0.016 0.002 0.002 0.002 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.320 0.010 0.129 0.411 34 G 0.041 0.019 0.006 0.001 0.002 0.002 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.115 0.008 0.163 0.630 35 C 0.146 0.035 0.015 0.002 0.002 0.002 0.003 0.002 0.003 0.001 0.003 0.001 0.002 0.002 0.002 0.002 0.175 0.011 0.092 0.501 36 M 0.030 0.033 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.106 0.004 0.094 0.723 37 G 0.060 0.066 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.007 0.129 0.659 38 A 0.221 0.191 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.098 0.016 0.104 0.357 39 Q 0.224 0.310 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.013 0.064 0.333 40 N 0.194 0.265 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.023 0.059 0.382 41 E 0.146 0.249 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.019 0.076 0.447 42 S 0.055 0.140 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.011 0.180 0.584 43 L 0.058 0.429 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.005 0.057 0.394 44 E 0.007 0.463 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.002 0.122 0.393 45 Q 0.049 0.423 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.018 0.271 0.230 46 G 0.017 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 47 A 0.010 0.974 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.009 48 N 0.018 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.005 0.002 0.013 49 A 0.043 0.897 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.026 0.002 0.023 50 H 0.078 0.821 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.061 0.002 0.027 51 G 0.448 0.145 0.073 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.157 0.014 0.152 52 L 0.063 0.005 0.865 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.018 0.041 53 N 0.019 0.009 0.028 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.003 0.294 0.634 54 V 0.027 0.014 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.001 0.040 0.867 55 E 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.203 0.782 56 D 0.023 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.890 0.080 57 I 0.009 0.946 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 58 L 0.012 0.957 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 59 R 0.010 0.967 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 60 D 0.016 0.934 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.038 61 L 0.028 0.938 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.018 62 N 0.061 0.884 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.005 0.030 63 A 0.103 0.651 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.065 0.012 0.130 64 L 0.323 0.361 0.023 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.100 0.013 0.171 65 A 0.203 0.234 0.028 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.044 0.036 0.426