# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1633	a.248.1.1	133507
1w9iA	770	7.260		
1w7jA	795	9.476	b.34.3.1,c.37.1.9	120688,120689
2v26A	784	11.35		
1u3eM	174	13.07	d.4.1.3,d.285.1.1	107640,107641
1y6uA	70	13.35		
2d5rB	116	21.13		
2bkhA	814	22.03		
1gbs	185	23.05		
2nxoA	291	28.18		
2al3A	90	37.19	d.15.1.2	126957
2b5aA	77	40.63	a.35.1.3	127882
1rp3A	239	49.09	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2uwxA	494	49.57	e.3.1.1	140002
2oap1	511	49.95		
2ouwA	138	51.11		
2cx5A	158	51.43		
2z15A	130	52.07		
2hinA	71	53.12		
1fe0A	68	53.86	d.58.17.1	39345
2feaA	236	54.96	c.108.1.20	133327
2j01U	118	57.25		
2oa4A	101	58.57		
1wdvA	152	60.16	d.116.1.1	114539
2z0xA	158	60.19		
2cfmA	561	60.45		
2gwfB	134	60.94		
1fipA	98	62.40	a.4.1.12	18980
1gbsA	185	63.07	d.2.1.5	36986
1ubkS	267	67.13	e.19.1.1	88423
2cobA	70	67.15	a.4.1.15	130673
1xb4A	202	68.19	a.4.5.54,a.4.5.54	121832,121833
2zfoB	142	69.92		
1qw1A	121	70.25		
2pgfA	371	72.62		
2cvhA	220	75.62		
1m1qA	91	79.71	a.138.1.3	74419
1ecaA	136	80.56	a.1.1.2	15209
1chuA	540	83.71	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
1sur	215	85.83		
1x9fB	145	85.93	a.1.1.2	114984
1aorA	605	86.22	a.110.1.1,d.152.1.1	19042,41794
2qnuA	226	86.83		
2q0tA	263	88.75