# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.1199	a.248.1.1	133507
1w9iA	770	3.457		
1y6uA	70	8.918		
2v26A	784	9.670		
1w7jA	795	12.81	b.34.3.1,c.37.1.9	120688,120689
2bkhA	814	18.52		
2gwfB	134	19.17		
2d5rB	116	19.68		
1u3eM	174	20.28	d.4.1.3,d.285.1.1	107640,107641
2nxoA	291	23.84		
2qnuA	226	26.16		
2j01U	118	27.88		
1ae7A	119	28.94	a.133.1.2	19553
2v9cA	215	30.00		
1qw1A	121	36.01		
1gbs	185	38.44		
1xb4A	202	40.42	a.4.5.54,a.4.5.54	121832,121833
2al3A	90	43.14	d.15.1.2	126957
2feaA	236	44.13	c.108.1.20	133327
2z15A	130	46.68		
2ogbA	126	51.21		
2fzpA	144	54.13		
2oa4A	101	57.17		
2cvhA	220	57.60		
1m1qA	91	59.82	a.138.1.3	74419
2ghjA	118	62.06		
1sur	215	64.83		
2qipA	165	67.45		
1ubkS	267	68.64	e.19.1.1	88423
2pgfA	371	68.96		
2nsvA	52	69.70		
1fe0A	68	71.13	d.58.17.1	39345
1ogiA	303	71.87	b.43.4.2,c.25.1.1	92914,92915
1aorA	605	73.78	a.110.1.1,d.152.1.1	19042,41794
2oy9A	98	75.34		
1vflA	356	75.67	c.1.9.1	120041
1jpyA	137	77.06	g.17.1.6	67065
2ouwA	138	78.76		
2b5aA	77	78.87	a.35.1.3	127882
2vl6A	268	78.88		
1zupA	315	79.26	c.55.3.11	125681
1ik9A	213	82.45	b.59.1.1,h.1.11.1	66176,66177
2zfoB	142	83.57		
1yhuB	144	86.10		
2vgxA	148	88.32		
1vk3A	615	88.95	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849