# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.04480	a.248.1.1	133507
1w9iA	770	2.933		
2v26A	784	6.376		
2d5rB	116	9.295		
1u3eM	174	9.431	d.4.1.3,d.285.1.1	107640,107641
1w7jA	795	9.667	b.34.3.1,c.37.1.9	120688,120689
1qw1A	121	12.29		
2bkhA	814	13.86		
2j01U	118	16.11		
1y6uA	70	22.12		
2cfmA	561	22.39		
1gbs	185	23.28		
2z15A	130	24.77		
2al3A	90	24.86	d.15.1.2	126957
2ghjA	118	25.93		
2cobA	70	26.03	a.4.1.15	130673
2pgfA	371	26.29		
2oy9A	98	31.81		
1xb4A	202	32.79	a.4.5.54,a.4.5.54	121832,121833
1mp9A	198	33.06	d.129.1.1,d.129.1.1	91385,91386
2ouwA	138	36.06		
2i9uA	439	38.90		
1vflA	356	39.66	c.1.9.1	120041
2b5aA	77	41.57	a.35.1.3	127882
2nsaA	170	42.88		
1ubkS	267	43.04	e.19.1.1	88423
2gokA	429	44.52		
1s6lA	212	46.81		
3c6fA	153	47.91		
2gwfB	134	48.08		
1wdvA	152	50.34	d.116.1.1	114539
2amxA	376	50.50	c.1.9.1	127024
2cx5A	158	52.36		
1aorA	605	53.70	a.110.1.1,d.152.1.1	19042,41794
1rp3A	239	55.56	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2imrA	420	56.37		
1fipA	98	56.76	a.4.1.12	18980
2z0xA	158	62.28		
2zc3A	168	63.70		
2vl6A	268	65.06		
1wi9A	72	65.42	a.4.5.47	114663
2cwcA	303	68.19		
1tw3A	360	71.61	a.4.5.29,c.66.1.12	107373,107374
1x9fB	145	72.61	a.1.1.2	114984
1sur	215	73.47		
1yhuB	144	74.25		
2hinA	71	74.83		
4uagA	437	75.56	c.5.1.1,c.59.1.1,c.72.2.1	30651,33952,34955
2z2mA	168	77.36		
2zfoB	142	78.47		
2de3A	365	79.07		
1ogiA	303	81.26	b.43.4.2,c.25.1.1	92914,92915
1cyo	93	82.50		
2q0tA	263	82.70		
2nxoA	291	84.03		
2hp0A	466	84.35		
1e8cA	498	86.20	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379
2aorA	223	88.13		
2z99A	219	88.81