# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.5112	a.248.1.1	133507
1w9iA	770	10.64		
2v26A	784	19.73		
1y6uA	70	22.46		
2d5rB	116	23.11		
1w7jA	795	28.32	b.34.3.1,c.37.1.9	120688,120689
1gbs	185	33.23		
1u3eM	174	37.40	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	39.20		
2gwfB	134	40.79		
2feaA	236	42.63	c.108.1.20	133327
2b5aA	77	44.57	a.35.1.3	127882
2qnuA	226	45.28		
2uwxA	494	46.12	e.3.1.1	140002
1fe0A	68	51.40	d.58.17.1	39345
2v9cA	215	52.02		
2nxoA	291	52.20		
1jpyA	137	55.89	g.17.1.6	67065
1vk3A	615	57.93	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1qw1A	121	60.51		
1gbsA	185	63.44	d.2.1.5	36986
1aorA	605	71.68	a.110.1.1,d.152.1.1	19042,41794
2pgfA	371	76.26		
2oap1	511	76.66		
2ezhA	75	78.88	a.4.1.2	16029
1x46A	150	78.88		
1ecaA	136	79.71	a.1.1.2	15209
2z15A	130	80.00		
1sur	215	80.65		
2pfyA	301	89.90