# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.6795	a.248.1.1	133507
1w9iA	770	8.573		
2v26A	784	17.54		
1w7jA	795	22.76	b.34.3.1,c.37.1.9	120688,120689
2d5rB	116	25.18		
1y6uA	70	27.99		
1gbs	185	28.80		
1u3eM	174	29.91	d.4.1.3,d.285.1.1	107640,107641
2bkhA	814	32.27		
1gbsA	185	42.64	d.2.1.5	36986
2feaA	236	44.93	c.108.1.20	133327
2b5aA	77	48.85	a.35.1.3	127882
2uwxA	494	56.46	e.3.1.1	140002
1qw1A	121	61.22		
2gwfB	134	62.91		
2qnuA	226	63.27		
1jpyA	137	65.45	g.17.1.6	67065
2z15A	130	70.32		
1ae7A	119	70.74	a.133.1.2	19553
2oap1	511	71.28		
1fe0A	68	72.62	d.58.17.1	39345
1fipA	98	72.67	a.4.1.12	18980
1sur	215	73.33		
1aorA	605	74.87	a.110.1.1,d.152.1.1	19042,41794
1vk3A	615	75.80	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2nxoA	291	76.36		
2ezhA	75	79.24	a.4.1.2	16029
2v9cA	215	80.73		
2qipA	165	81.18		
1x46A	150	82.69		
2cobA	70	85.30	a.4.1.15	130673
2i9uA	439	88.32